Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014179.1 Corchorus capsularis cultivar CVL-1 contig14200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11235
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32


Found at i:2560 original size:27 final size:27

Alignment explanation


    Indices: 2529--2603  Score: 87
    Period size: 27  Copynumber: 2.8  Consensus size: 27

       2519 AAGTGGACTT

                  *                  * 
       2529 AAAATGGCCAAAATGCCCCTGAATGTA
          1 AAAATGACCAAAATGCCCCTGAATGCA

            *         *    *   **      
       2556 CAAATGACCAGAATGTCCCAAAATGCA
          1 AAAATGACCAAAATGCCCCTGAATGCA

                                 
       2583 AAAATGACCAAAATGCCCCTG
          1 AAAATGACCAAAATGCCCCTG

       2604 GATGACCCTA


Statistics
Matches: 36,  Mismatches: 12, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  27   36  1.00

ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16


Consensus pattern (27 bp):   
AAAATGACCAAAATGCCCCTGAATGCA
Done.