Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014181.1 Corchorus capsularis cultivar CVL-1 contig14202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16589
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:3082 original size:30 final size:32

Alignment explanation


    Indices: 3031--3116  Score: 104
    Period size: 33  Copynumber: 2.7  Consensus size: 32

       3021 GCCGCGCAAC

                                           *  
       3031 ACCGGCCACATGACCGGCCATCGCATGG-G-GCA
          1 ACCGGCCACA--ACCGGCCATCGCATGGCGACCA

                        *         *          
       3063 ACCGGCCACAACTGGCCATCGCTTGGCGCACCA
          1 ACCGGCCACAACCGGCCATCGCATGGCG-ACCA

                                 
       3096 ACCGGCCACAACCGGCCATCG
          1 ACCGGCCACAACCGGCCATCG

       3117 ATTGGGCCAT


Statistics
Matches: 47,  Mismatches: 4, Indels: 5
        0.84            0.07        0.09

Matches are distributed among these distances:
  30   14  0.30
  31    1  0.02
  32   10  0.21
  33   22  0.47

ACGTcount: A:0.22, C:0.42, G:0.27, T:0.09


Consensus pattern (32 bp):   
ACCGGCCACAACCGGCCATCGCATGGCGACCA
Done.