Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014182.1 Corchorus capsularis cultivar CVL-1 contig14203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33556

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
797--838
16
2.6
16
84
0
57
38
28
14
19
1.90
842--872
16
1.9
16
100
0
62
25
51
16
6
1.68
1611--1665
23
2.4
23
81
6
67
29
43
21
5
1.75
1654--1723
16
4.4
16
84
10
99
42
40
11
5
1.65
1611--1665
6
9.5
6
76
7
51
29
43
21
5
1.75
6514--6567
21
2.6
21
66
0
54
48
7
20
24
1.75
12670--12712
17
2.5
17
96
0
77
25
18
20
34
1.96
12854--12878
11
2.3
11
100
0
50
40
8
20
32
1.81
16649--16678
2
15.0
2
100
0
60
50
0
0
50
1.00
19831--19910
41
2.0
41
97
0
151
42
8
18
30
1.81
19918--20123
70
2.9
70
79
3
200
40
11
21
26
1.87
20135--20247
40
2.8
40
82
0
136
50
10
13
25
1.73
20252--20806
36
15.7
36
87
2
716
44
8
21
25
1.81
28875--28947
32
2.3
32
90
4
112
26
23
26
24
2.00
29142--29208
32
2.1
32
82
0
80
20
20
23
34
1.97
30066--30090
2
12.5
2
100
0
50
48
0
0
52
1.00
31112--31227
27
4.3
27
92
2
189
23
39
18
18
1.92

Tables:   1

The End!