Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014183.1 Corchorus capsularis cultivar CVL-1 contig14204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55230

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1450--1477
2
14.0
2
100
0
56
50
0
0
50
1.00
1659--1724
32
2.1
32
97
0
123
30
28
22
18
1.97
1779--1888
24
4.5
24
83
2
121
21
30
30
17
1.96
1779--1890
49
2.3
48
82
1
125
21
31
30
16
1.96
10018--10047
6
5.0
6
100
0
60
33
0
0
66
0.92
12937--12966
15
2.1
15
93
6
53
36
3
13
46
1.60
14001--14152
74
2.1
74
97
0
286
26
13
14
46
1.81
14000--14119
40
3.2
39
64
22
101
27
13
13
45
1.80
18839--18873
18
1.9
18
88
0
52
17
8
20
54
1.68
21200--21281
31
2.6
31
92
0
128
37
10
18
32
1.86
21763--21821
25
2.4
25
88
0
82
3
33
5
57
1.37
22685--22736
22
2.4
22
87
3
70
32
9
40
17
1.82
22735--22774
11
3.5
11
90
6
62
82
0
17
0
0.67
22735--22775
12
3.5
12
93
3
66
82
0
17
0
0.66
24351--24409
27
2.2
27
81
0
73
13
8
55
22
1.64
37103--37221
58
2.1
58
98
0
229
40
8
9
42
1.67
39844--39875
2
16.0
2
100
0
64
50
0
0
50
1.00
46297--46363
32
2.1
32
100
0
134
59
8
2
28
1.42
49421--49453
1
33.0
1
93
0
57
96
0
3
0
0.20
50003--50045
17
2.4
18
76
7
52
34
16
13
34
1.88
54090--54144
28
2.0
28
100
0
110
32
10
20
36
1.87

Tables:   1

The End!