Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014185.1 Corchorus capsularis cultivar CVL-1 contig14206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19974

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
893--923
13
2.4
13
94
0
53
32
9
0
58
1.31
6901--6961
28
2.3
26
75
10
68
39
11
9
39
1.75
6966--7031
32
2.0
33
88
2
98
51
9
12
27
1.69
8959--8998
19
2.1
19
100
0
80
35
27
22
15
1.94
13864--14180
156
2.0
156
95
0
562
33
13
22
30
1.92
15532--15586
22
2.5
22
81
0
65
23
23
5
47
1.72
15609--15708
44
2.3
44
79
3
105
19
22
6
53
1.66
15629--15722
22
4.4
22
77
4
93
18
24
6
51
1.69
15671--15758
35
2.5
35
79
3
115
19
26
5
48
1.70
15732--15883
14
11.0
14
70
16
77
19
21
6
52
1.68
15732--15862
43
3.2
44
78
13
136
19
22
6
51
1.69
15809--15883
28
2.7
28
85
10
100
20
20
4
56
1.58
15878--15931
26
2.1
26
93
6
92
27
14
3
53
1.58
15884--15939
26
2.2
26
87
6
78
26
17
3
51
1.62
15905--15987
32
2.5
33
83
13
116
24
18
6
51
1.68
15978--16094
45
2.5
46
93
4
191
16
23
6
53
1.66
16078--16159
40
2.2
36
83
16
98
21
21
3
52
1.62
16281--16353
32
2.3
32
83
4
85
20
23
6
49
1.73
16330--16427
38
2.5
39
75
8
101
26
21
5
46
1.72

Tables:   1

The End!