Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014186.1 Corchorus capsularis cultivar CVL-1 contig14207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45133

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4478--4510
2
16.5
2
100
0
66
51
48
0
0
1.00
4510--4539
2
15.0
2
100
0
60
50
0
0
50
1.00
5470--5537
32
2.1
33
86
5
93
41
17
33
7
1.77
5840--5876
17
2.2
17
90
0
56
35
2
10
51
1.51
6314--6359
23
2.1
22
88
8
67
21
8
13
56
1.63
6586--6637
20
2.6
19
88
8
77
48
23
15
13
1.80
9747--9797
26
1.9
27
92
4
86
27
47
17
7
1.75
9857--9927
16
4.4
16
76
13
74
36
36
16
9
1.82
9833--9906
32
2.3
32
77
13
80
35
37
20
6
1.79
9857--9927
32
2.2
32
87
5
99
36
36
16
9
1.82
10733--10884
16
9.6
16
86
7
202
32
37
23
6
1.81
11252--11314
33
1.9
33
96
0
117
46
11
19
23
1.82
25438--25630
38
5.0
38
87
2
278
23
18
37
20
1.94
25629--25665
6
6.2
6
87
0
56
18
2
32
45
1.64
29983--30138
77
2.0
77
96
0
285
25
15
22
37
1.93
34585--34612
6
4.7
6
100
0
56
32
50
0
17
1.47
36422--36480
25
2.4
25
91
5
95
35
25
0
38
1.56
37513--37632
31
4.0
30
82
4
116
40
23
18
18
1.92
38135--38224
44
2.0
44
100
0
180
46
20
2
31
1.62

Tables:   1

The End!