Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014194.1 Corchorus capsularis cultivar CVL-1 contig14215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1839
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.27


Found at i:1116 original size:70 final size:70

Alignment explanation


    Indices: 1003--1141  Score: 260
    Period size: 70  Copynumber: 2.0  Consensus size: 70

        993 AAGGTCTGCA

                                                                             
       1003 AAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAATAGTACAAAGTAGAATTA
          1 AAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAATAGTACAAAGTAGAATTA

                 
       1068 TTGTG
         66 TTGTG

                               * *                                           
       1073 AAGTTATCATGAAGAATCTTTTCAGAAATTGTCTCCAATAATGCAAATAGTACAAAGTAGAATTA
          1 AAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAATAGTACAAAGTAGAATTA

                
       1138 TTGT
         66 TTGT

       1142 ATTGAAATTG


Statistics
Matches: 67,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  70   67  1.00

ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32


Consensus pattern (70 bp):   
AAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAATAGTACAAAGTAGAATTA
TTGTG
Done.