genome.fa.s14196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014196.1 Corchorus capsularis cultivar CVL-1 contig14217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43322

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3210--3240	2	15.5	2	100	0	62	48	0	0	51	1.00
5822--5846	10	2.5	10	100	0	50	44	8	0	48	1.32
7046--7152	33	3.2	32	84	5	117	8	27	40	24	1.84
10957--10993	19	2.0	18	89	5	56	29	21	8	40	1.82
11231--11316	38	2.3	38	87	0	118	31	19	17	31	1.95
11331--11618	43	6.8	42	82	2	360	24	30	19	25	1.98
11331--11617	85	3.4	84	83	5	353	24	30	19	25	1.98
11339--11623	128	2.2	128	89	1	417	24	29	19	27	1.98
11334--11660	43	7.7	42	81	5	300	25	28	19	26	1.99
14945--15491	35	15.8	35	80	6	537	41	13	17	27	1.87
14945--15459	102	5.0	102	82	7	551	41	13	17	26	1.87
15542--15683	36	3.9	36	88	0	212	45	7	21	26	1.77
24509--24554	19	2.4	18	82	7	56	78	0	19	2	0.86
24564--24622	19	3.5	19	70	29	69	38	8	16	35	1.80
24564--24626	31	2.1	30	93	3	108	36	7	19	36	1.81
24588--24693	44	2.4	44	90	4	160	39	8	18	33	1.81
25372--25428	17	3.7	16	76	23	68	85	0	14	0	0.59
25371--25428	27	2.2	26	90	6	91	84	0	15	0	0.62
25374--25427	5	11.8	5	83	15	64	85	0	14	0	0.61
26551--26654	35	2.9	36	74	8	113	15	15	26	42	1.87
26634--26830	71	2.8	72	87	4	274	23	17	20	38	1.93
26810--26917	36	3.0	36	75	2	119	16	14	26	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26802--26906	36	3.0	35	74	2	120	13	17	26	42	1.86
26706--27409	189	3.7	192	88	4	1024	19	17	23	38	1.93
26999--27106	36	3.0	36	76	2	128	16	14	27	40	1.88
27285--27918	70	9.0	70	86	3	871	21	19	21	37	1.95
27285--27918	211	3.0	211	92	0	1009	21	19	21	37	1.95
27285--27918	141	4.5	140	88	2	878	21	19	21	37	1.95
28785--29102	132	2.4	132	88	0	456	33	16	13	35	1.88
32432--32476	20	2.2	20	92	0	72	24	15	22	37	1.93
32623--32661	19	2.1	19	85	0	51	33	10	5	51	1.58
37577--37997	215	1.9	207	85	7	504	28	18	13	39	1.88
38359--38418	15	3.7	16	69	10	50	40	5	3	51	1.40
38661--38738	38	2.1	38	80	9	88	32	19	19	29	1.96
39224--39733	66	7.6	66	80	7	501	40	17	18	23	1.91
39224--39727	137	3.8	133	80	6	495	40	17	19	23	1.91
39224--39726	203	2.5	197	83	7	584	40	17	19	23	1.91

Tables:   1

The End!