Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014198.1 Corchorus capsularis cultivar CVL-1 contig14219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3875
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28


Found at i:3568 original size:30 final size:30

Alignment explanation


    Indices: 3532--3590  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       3522 TGTCTTCAAG

                                 *         
       3532 TCCATGATAAGTCCTT-GGCGTATCATTCCT
          1 TCCATGATAAG-CCTTGGGCGCATCATTCCT

                                         
       3562 TCCATGATAAGCCTTGGGCGCATCATTCC
          1 TCCATGATAAGCCTTGGGCGCATCATTCC

       3591 CTCCCCCTTG


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  29    4  0.15
  30   23  0.85

ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32


Consensus pattern (30 bp):   
TCCATGATAAGCCTTGGGCGCATCATTCCT
Done.