Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014200.1 Corchorus capsularis cultivar CVL-1 contig14221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2888
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Found at i:1617 original size:33 final size:32

Alignment explanation


    Indices: 1519--1659  Score: 156
    Period size: 33  Copynumber: 4.3  Consensus size: 32

       1509 AAAGGATCAT

                                  *   *    **
       1519 GTGGCCGGTTGTGGCCGGGCATGGCCGAGTCAT
          1 GTGGCCGG-TGTGGCCGGGCATCGCCAAGTCGC

                                  *    *     
       1552 GTGGCCGGTGATGGCCGGGCATGGCCATGTCGC
          1 GTGGCCGGTG-TGGCCGGGCATCGCCAAGTCGC

                                   *         
       1585 GTGGCCGGTGATGGCCGGGCATCTCCAAGTCGC
          1 GTGGCCGGTG-TGGCCGGGCATCGCCAAGTCGC

            *          *           *         
       1618 ATGGCCGGTGTTGCGCGGGCATCTCCAAGTCGC
          1 GTGGCCGGTGTGGC-CGGGCATCGCCAAGTCGC

                     
       1651 GTGGCCGGT
          1 GTGGCCGGT

       1660 CACTAGTGCT


Statistics
Matches: 96,  Mismatches: 10, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
  32    5  0.05
  33   91  0.95

ACGTcount: A:0.10, C:0.28, G:0.43, T:0.20


Consensus pattern (32 bp):   
GTGGCCGGTGTGGCCGGGCATCGCCAAGTCGC
Done.