Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014202.1 Corchorus capsularis cultivar CVL-1 contig14223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3518
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:2070 original size:33 final size:33

Alignment explanation


    Indices: 1972--2112  Score: 162
    Period size: 33  Copynumber: 4.3  Consensus size: 33

       1962 AAAGGATCAT

                                   **  *    **
       1972 GTGGCCGGTTG-TGGCCGGGCATGGCCGAGTCAT
          1 GTGGCCGG-TGATGGCCGGGCATCTCCAAGTCGC

                                        *     
       2005 GTGGCCGGTGATGGCCGGGCAT-TGCCATGTCGC
          1 GTGGCCGGTGATGGCCGGGCATCT-CCAAGTCGC

                                             
       2038 GTGGCCGGTGATGGCCGGGCATCTCCAAGTCGC
          1 GTGGCCGGTGATGGCCGGGCATCTCCAAGTCGC

            *           *                     
       2071 ATGGCCGGT-ATTGCGCGGGCATCTCCAAGTCGC
          1 GTGGCCGGTGATGGC-CGGGCATCTCCAAGTCGC

                     
       2104 GTGGCCGGT
          1 GTGGCCGGT

       2113 CACTAGTGCT


Statistics
Matches: 95,  Mismatches: 9, Indels: 8
        0.85            0.08        0.07

Matches are distributed among these distances:
  32    6  0.06
  33   88  0.93
  34    1  0.01

ACGTcount: A:0.11, C:0.28, G:0.41, T:0.21


Consensus pattern (33 bp):   
GTGGCCGGTGATGGCCGGGCATCTCCAAGTCGC
Done.