Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014204.1 Corchorus capsularis cultivar CVL-1 contig14225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3008
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:1402 original size:12 final size:12

Alignment explanation


    Indices: 1385--1423  Score: 71
    Period size: 12  Copynumber: 3.3  Consensus size: 12

       1375 GAAGTTGCCA

                        
       1385 TCTTTGGATCAC
          1 TCTTTGGATCAC

                        
       1397 TCTTTGGATCAC
          1 TCTTTGGATCAC

                        
       1409 TC-TTGGATCAC
          1 TCTTTGGATCAC

                
       1420 TCTT
          1 TCTT

       1424 GCCGAAGTGC


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  11   11  0.42
  12   15  0.58

ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44


Consensus pattern (12 bp):   
TCTTTGGATCAC

Found at i:1416 original size:11 final size:11

Alignment explanation


    Indices: 1388--1424  Score: 65
    Period size: 11  Copynumber: 3.3  Consensus size: 11

       1378 GTTGCCATCT

                       
       1388 TTGGATCACTC
          1 TTGGATCACTC

                        
       1399 TTTGGATCACTC
          1 -TTGGATCACTC

                       
       1411 TTGGATCACTC
          1 TTGGATCACTC

               
       1422 TTG
          1 TTG

       1425 CCGAAGTGCA


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  11   14  0.56
  12   11  0.44

ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41


Consensus pattern (11 bp):   
TTGGATCACTC
Done.