Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014207.1 Corchorus capsularis cultivar CVL-1 contig14228, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8045
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:1379 original size:78 final size:78

Alignment explanation


    Indices: 1297--1448  Score: 295
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1287 GAATCGGCTA

                                         *                                   
       1297 TGAATTTTTGAATTTTTCAAGAAGGGTGGTGCGATATGAGTGTGGGTGAAATCGATGGGATGAAT
          1 TGAATTTTTGAATTTTTCAAGAAGGGTGGCGCGATATGAGTGTGGGTGAAATCGATGGGATGAAT

                         
       1362 GATGAGTAATTTC
         66 GATGAGTAATTTC

                                                                             
       1375 TGAATTTTTGAATTTTTCAAGAAGGGTGGCGCGATATGAGTGTGGGTGAAATCGATGGGATGAAT
          1 TGAATTTTTGAATTTTTCAAGAAGGGTGGCGCGATATGAGTGTGGGTGAAATCGATGGGATGAAT

                     
       1440 GATGAGTAA
         66 GATGAGTAA

       1449 AAAGATAGAT


Statistics
Matches: 73,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  78   73  1.00

ACGTcount: A:0.29, C:0.05, G:0.33, T:0.33


Consensus pattern (78 bp):   
TGAATTTTTGAATTTTTCAAGAAGGGTGGCGCGATATGAGTGTGGGTGAAATCGATGGGATGAAT
GATGAGTAATTTC
Done.