genome.fa.s14211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014211.1 Corchorus capsularis cultivar CVL-1 contig14232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37793

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394--429	19	1.9	18	88	5	54	41	2	22	33	1.68
1985--2044	30	2.0	30	87	6	86	18	25	21	35	1.96
3370--3414	17	2.6	17	82	6	56	53	0	2	44	1.13
5367--5411	21	2.1	22	83	4	56	17	35	8	37	1.81
5883--5948	13	4.8	13	81	17	80	27	0	13	59	1.35
8053--8099	22	2.1	22	92	0	76	44	4	6	44	1.49
8053--8095	11	3.9	11	87	0	59	44	4	6	44	1.52
8238--8277	2	19.5	2	89	5	62	47	0	5	47	1.24
15641--15702	27	2.3	27	100	0	124	43	14	25	16	1.86
15720--15757	18	2.1	18	95	0	67	42	15	34	7	1.76
17044--17202	41	3.8	39	80	13	142	33	16	15	34	1.90
17085--17229	43	3.4	42	83	3	166	30	14	17	37	1.89
17211--17481	47	5.7	47	90	3	416	38	10	9	41	1.73
17211--17481	98	2.8	97	88	6	394	38	10	9	41	1.73
17211--17478	145	1.8	146	92	0	457	38	10	10	41	1.73
17897--17926	2	15.0	2	92	0	51	50	3	0	46	1.18
18580--18617	19	2.0	19	100	0	76	47	26	10	15	1.78
22621--22666	17	2.7	18	83	10	69	26	50	15	8	1.73
22738--22813	16	4.8	16	85	0	107	34	35	21	9	1.85
22725--22813	32	2.8	32	89	3	126	33	38	20	7	1.81
22918--22965	21	2.3	21	81	0	60	31	6	6	56	1.49
23404--23506	16	6.6	16	69	2	66	37	31	18	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23408--23488	32	2.6	32	84	7	103	38	32	18	11	1.86
30685--30774	16	5.6	16	80	10	103	32	36	21	10	1.86
30670--30760	48	1.9	47	84	2	119	28	41	20	8	1.82
30693--30774	32	2.6	32	90	7	123	32	37	19	9	1.85
30880--30926	21	2.2	21	88	0	67	27	8	8	55	1.59
31372--31432	7	7.9	7	73	20	50	31	37	22	8	1.84
31372--31473	9	12.9	8	68	22	56	34	37	19	8	1.83
31372--31472	16	6.4	17	76	16	92	33	37	19	8	1.83
31372--31474	32	3.3	31	82	10	129	34	36	19	8	1.83
34526--34641	52	2.2	52	84	3	144	25	27	14	31	1.95
34611--34691	27	3.1	27	71	20	82	27	27	9	35	1.88
34611--34843	50	4.7	50	91	1	369	24	28	11	36	1.90
34757--34840	27	3.3	27	63	19	70	23	29	11	34	1.91
34844--35311	50	9.3	50	89	1	652	23	29	11	36	1.89
35048--35129	27	3.2	27	62	19	66	23	34	10	31	1.89
35223--35303	23	3.3	23	71	15	81	17	27	11	44	1.82
35246--35331	28	3.2	28	71	15	101	22	26	9	41	1.83
35468--36410	64	14.8	64	89	1	1360	27	24	14	34	1.94
35818--35911	28	3.2	28	64	24	66	26	24	14	34	1.94

Tables:   1

The End!