Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014212.1 Corchorus capsularis cultivar CVL-1 contig14233, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12214
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:8120 original size:19 final size:19

Alignment explanation


    Indices: 8096--8133  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       8086 TCTACAACTT

                               
       8096 TCCTTCGAAGTCCGAAGCC
          1 TCCTTCGAAGTCCGAAGCC

                               
       8115 TCCTTCGAAGTCCGAAGCC
          1 TCCTTCGAAGTCCGAAGCC

       8134 CAATTCTGCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.21, C:0.37, G:0.21, T:0.21


Consensus pattern (19 bp):   
TCCTTCGAAGTCCGAAGCC
Done.