Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014215.1 Corchorus capsularis cultivar CVL-1 contig14236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29221

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1642--1844
22
9.5
22
73
13
93
20
21
2
55
1.57
1678--1719
8
5.4
8
77
5
50
16
21
2
59
1.48
1608--1885
129
2.2
129
86
3
364
20
20
3
54
1.61
1716--1753
20
1.9
20
89
10
60
21
18
5
55
1.62
1691--1915
106
2.1
107
81
11
266
20
20
4
55
1.62
1641--1885
129
1.9
128
91
0
400
20
21
3
55
1.59
1641--1953
129
2.4
128
82
7
332
21
20
4
54
1.61
1924--2005
30
2.6
32
84
7
105
25
14
8
51
1.71
5489--5558
26
2.6
27
84
4
97
44
27
12
15
1.83
5741--5775
9
3.8
9
88
3
52
0
11
0
88
0.51
5741--5775
10
3.6
10
84
7
54
0
11
0
88
0.51
5732--5774
18
2.3
19
84
4
52
0
18
0
81
0.69
5743--5774
16
1.9
17
93
6
57
0
12
0
87
0.54
5740--5775
19
1.9
18
94
5
63
0
13
0
86
0.58
5999--6682
70
9.9
69
84
7
847
27
18
27
26
1.98
5999--6682
139
5.0
137
88
4
984
27
18
27
26
1.98
5999--6682
275
2.5
277
91
2
1101
27
18
27
26
1.98
7157--7255
50
2.0
50
91
0
162
36
13
16
34
1.87
8169--8230
22
2.8
21
79
13
63
1
16
3
79
0.95
8765--8949
44
4.2
44
94
0
280
36
20
5
37
1.77
8849--8930
25
3.5
25
66
19
77
36
19
2
41
1.65
8955--8996
9
4.6
9
83
16
59
0
23
0
76
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8955--9031
7
11.0
7
70
10
50
3
20
0
75
0.96
9407--9558
75
2.0
75
87
2
216
30
21
10
38
1.87
16668--16706
2
19.0
2
84
5
51
48
5
2
43
1.38
17369--17422
25
2.2
25
96
0
99
11
24
33
31
1.90
19913--20008
44
2.2
44
90
0
147
27
5
16
51
1.66
23533--23711
89
2.0
89
96
0
331
32
13
20
32
1.92
26039--26110
37
2.0
35
91
5
117
27
25
8
38
1.84
28062--28093
16
2.0
16
93
0
55
21
18
0
59
1.38

Tables:   1

The End!