Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014216.1 Corchorus capsularis cultivar CVL-1 contig14237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1732
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37


Found at i:70 original size:21 final size:21

Alignment explanation


    Indices: 44--85  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         34 GTTCTTCTTT

                                  
         44 AAGGTTACTAAAAAA-GTTATA
          1 AAGGTTA-TAAAAAATGTTATA

                                 
         65 AAGGTTATAAAAAATGTTATA
          1 AAGGTTATAAAAAATGTTATA

         86 GTATTATAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  20    7  0.35
  21   13  0.65

ACGTcount: A:0.52, C:0.02, G:0.14, T:0.31


Consensus pattern (21 bp):   
AAGGTTATAAAAAATGTTATA

Found at i:395 original size:21 final size:20

Alignment explanation


    Indices: 353--396  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 20

        343 TCTTGTAATC

                             *  
        353 TAAAATTACTAAAAAAGTTA
          1 TAAAATTACTAAAAAAGCTA

                     *     *     
        373 TAAAAGTTATTAAAATAGCTA
          1 TAAAA-TTACTAAAAAAGCTA

               
        394 TAA
          1 TAA

        397 TGCTTTCCAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  20    5  0.25
  21   15  0.75

ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32


Consensus pattern (20 bp):   
TAAAATTACTAAAAAAGCTA
Done.