genome.fa.s14220.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014220.1 Corchorus capsularis cultivar CVL-1 contig14241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86236

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1680--1710	16	1.9	16	93	0	53	22	38	22	16	1.92
1908--1944	14	2.7	14	87	4	58	67	0	13	18	1.23
2340--2481	16	8.9	16	80	4	126	37	36	16	9	1.82
2339--2483	48	3.0	48	85	5	170	38	35	15	9	1.81
2339--2481	32	4.5	32	81	3	146	37	36	16	9	1.81
3531--3568	16	2.4	16	82	4	51	7	13	36	42	1.73
4327--4359	2	17.0	2	87	6	50	51	3	0	45	1.16
4330--4362	15	2.2	15	94	0	57	54	3	0	42	1.15
8083--8118	2	18.0	2	100	0	72	50	0	0	50	1.00
9437--9914	237	2.0	237	100	0	956	38	13	15	31	1.87
10505--10590	42	2.0	42	86	10	122	51	8	3	37	1.49
15358--15391	16	2.1	16	94	0	59	41	14	23	20	1.89
18439--18464	3	8.7	3	100	0	52	69	0	30	0	0.89
19218--19249	2	16.0	2	100	0	64	50	0	0	50	1.00
19370--19437	16	4.2	16	83	5	66	54	30	10	4	1.54
19636--19741	32	3.3	32	76	6	117	38	36	11	13	1.80
19721--19758	17	2.2	17	90	0	58	39	36	5	18	1.73
21867--21967	22	4.5	22	74	7	87	35	18	9	35	1.84
21867--21967	46	2.2	44	84	3	130	35	18	9	35	1.84
22460--22735	22	12.7	22	68	9	127	32	15	11	40	1.83
22827--22864	20	1.9	20	84	10	51	39	10	0	50	1.37
34269--34320	26	2.0	26	100	0	104	34	15	11	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35229--35265	2	18.5	2	100	0	74	48	0	0	51	1.00
35407--35845	22	20.0	22	68	14	153	35	15	10	38	1.82
35947--36113	66	2.5	65	74	8	151	36	12	9	41	1.76
36077--36148	21	3.2	24	85	14	100	33	12	9	44	1.75
35923--36193	22	12.4	22	70	13	125	33	13	9	42	1.77
36213--36338	22	5.8	21	70	17	71	39	18	7	34	1.80
36373--36557	22	8.3	22	74	13	130	38	18	9	33	1.84
36425--36555	44	3.0	43	85	5	165	35	17	11	35	1.86
36721--36758	19	2.0	20	85	15	53	63	2	5	28	1.30
37355--37446	38	2.5	37	82	3	121	55	9	19	15	1.67
37843--38277	22	20.0	21	68	14	138	36	15	10	37	1.82
38245--38285	20	2.1	20	90	4	66	31	17	9	41	1.82
38383--38629	22	11.3	22	70	13	145	34	13	9	42	1.77
38359--38574	44	4.9	44	74	14	171	35	12	9	43	1.75
38383--38549	66	2.5	66	82	2	203	35	13	8	41	1.75
38358--38522	88	1.9	88	83	5	217	34	13	9	42	1.77
38653--38723	22	3.2	22	75	15	58	38	18	8	35	1.81
38831--38964	22	6.0	22	72	16	98	39	17	7	35	1.78
38829--38961	44	3.0	42	81	11	133	38	17	7	36	1.78
39173--39476	152	2.0	152	86	6	429	42	9	9	37	1.71
39677--39744	31	2.2	32	84	10	95	48	4	11	35	1.60
39685--39750	31	2.1	32	88	5	100	48	4	15	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42414--42485	28	2.6	28	97	0	135	23	27	16	31	1.96
43102--43150	17	2.9	17	93	0	89	28	16	34	20	1.94
50894--51011	41	2.9	41	81	6	132	15	13	22	48	1.80
56758--56861	50	2.1	50	88	0	154	38	16	6	38	1.75
56923--57027	50	2.1	50	90	0	165	40	16	6	36	1.74
61193--61251	23	2.5	23	83	2	73	45	5	11	37	1.63
60942--61404	22	20.8	23	70	16	271	36	8	16	38	1.79
60992--61294	90	3.4	89	77	11	239	37	6	16	39	1.75
61276--61383	46	2.4	45	85	3	146	36	12	14	36	1.85
61512--61570	22	2.7	23	74	15	61	44	8	10	37	1.69
61644--61748	54	1.9	54	100	0	210	37	9	21	31	1.86
61739--61767	14	2.1	14	100	0	58	31	13	34	20	1.92
69340--69375	2	18.5	2	94	5	65	47	0	0	52	1.00
69339--69375	19	1.9	19	100	0	74	45	0	0	54	1.00
69342--69375	17	2.0	17	100	0	68	47	0	0	52	1.00
70567--70594	1	28.0	1	100	0	56	100	0	0	0	0.00
71888--71975	42	2.1	42	97	0	167	30	22	18	28	1.97
73038--73096	29	2.1	27	87	6	82	42	10	10	37	1.73
76112--76167	27	2.1	27	93	0	94	28	8	5	57	1.52
79465--79498	17	2.0	17	88	11	52	58	5	0	35	1.22

Tables:   1

The End!