Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014224.1 Corchorus capsularis cultivar CVL-1 contig14245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28412
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:18000 original size:16 final size:16

Alignment explanation


    Indices: 17979--18011  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

      17969 CTGAACTGTC

                            
      17979 CCCTTTGAGACTATTA
          1 CCCTTTGAGACTATTA

                   *        
      17995 CCCTTTGGGACTATTA
          1 CCCTTTGAGACTATTA

             
      18011 C
          1 C

      18012 ATATTATATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.21, C:0.27, G:0.15, T:0.36


Consensus pattern (16 bp):   
CCCTTTGAGACTATTA
Done.