Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014226.1 Corchorus capsularis cultivar CVL-1 contig14247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63112

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
300--347
22
2.2
22
96
0
87
47
6
20
25
1.73
7186--7241
12
4.7
12
86
0
58
58
1
1
37
1.19
7196--7244
17
2.9
17
84
3
64
59
0
0
40
0.98
9402--9827
211
2.0
212
96
0
791
35
15
17
31
1.91
19121--19166
2
23.0
2
82
8
58
54
0
2
43
1.12
22612--22662
25
2.0
25
85
11
68
52
1
7
37
1.42
28997--29023
13
2.1
13
100
0
54
33
7
29
29
1.85
32923--32953
14
2.2
14
94
0
53
16
9
29
45
1.79
40559--40584
2
13.0
2
100
0
52
50
0
0
50
1.00
41677--41766
37
2.4
37
92
0
144
58
13
13
14
1.63
42038--42104
31
2.2
31
86
5
91
55
4
13
26
1.57
41858--42123
134
2.0
134
91
0
435
50
6
11
31
1.64
43292--43362
37
2.1
35
82
12
85
50
4
11
33
1.57
45908--45958
26
2.0
26
96
0
93
15
19
23
41
1.90
49112--49152
6
6.8
6
94
0
73
51
0
48
0
1.00
53613--53642
11
2.6
12
94
5
53
0
23
16
60
1.36
54624--54669
21
2.1
23
84
8
60
32
2
4
60
1.28
59188--59326
65
2.2
64
88
2
206
51
15
18
15
1.77
60070--60104
16
2.2
16
100
0
70
45
17
25
11
1.81
63036--63104
3
23.0
3
100
0
138
66
0
0
33
0.92

Tables:   1

The End!