Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014228.1 Corchorus capsularis cultivar CVL-1 contig14249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35636

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1058--1207
51
2.8
51
80
6
156
54
15
16
14
1.72
8567--8794
115
2.0
114
93
2
388
21
7
21
49
1.73
9213--9268
28
2.0
28
92
0
94
21
5
16
57
1.59
9553--9603
21
2.4
21
96
0
93
27
7
37
27
1.84
9583--9614
15
2.1
15
94
0
55
28
9
34
28
1.88
9662--9686
2
12.5
2
100
0
50
48
0
0
52
1.00
11411--11527
58
2.0
58
98
0
225
37
13
18
29
1.90
11738--11773
1
36.0
1
100
0
72
0
0
0
100
0.00
15339--15531
50
3.9
50
98
0
370
22
10
6
61
1.50
15339--15541
99
2.1
98
94
2
354
21
10
5
62
1.49
19353--19389
7
5.3
7
96
0
65
0
10
75
13
1.04
29468--29500
10
3.3
10
91
0
57
60
12
27
0
1.32
33636--33662
6
4.5
6
100
0
54
0
33
14
51
1.43
33917--33949
2
16.5
2
100
0
66
51
0
0
48
1.00
35326--35396
31
2.2
32
90
2
108
40
38
15
5
1.71
35326--35396
16
4.5
16
82
3
99
40
38
15
5
1.71

Tables:   1

The End!