Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014230.1 Corchorus capsularis cultivar CVL-1 contig14251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5900
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39


Found at i:322 original size:20 final size:20

Alignment explanation


    Indices: 286--323  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        276 TCATTTTATT

                     *          
        286 TTCTTCTTCTTTCTTTTTTG
          1 TTCTTCTTCATTCTTTTTTG

                               
        306 TTCTTCTT-ATTCGTTTTT
          1 TTCTTCTTCATTC-TTTTT

        324 AGTTTTCACT


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  19    3  0.19
  20   13  0.81

ACGTcount: A:0.03, C:0.18, G:0.05, T:0.74


Consensus pattern (20 bp):   
TTCTTCTTCATTCTTTTTTG
Done.