Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014235.1 Corchorus capsularis cultivar CVL-1 contig14256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110830

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1875--2042
84
2.1
80
86
6
232
47
2
11
38
1.54
2814--2986
88
2.0
88
97
0
328
26
30
7
35
1.84
7862--7903
2
21.0
2
100
0
84
50
0
0
50
1.00
12366--12412
22
2.1
22
96
0
85
42
4
6
46
1.48
12366--12408
11
3.9
11
90
0
68
41
4
6
46
1.51
12931--12997
21
3.3
21
68
16
68
46
8
5
38
1.60
12917--12998
40
2.0
40
95
0
146
43
10
7
37
1.68
17354--17381
13
2.2
13
100
0
56
46
0
7
46
1.30
17244--17485
123
1.9
125
89
5
373
49
2
10
38
1.49
19918--19981
27
2.3
27
81
5
65
39
4
9
46
1.57
28160--28184
11
2.3
11
100
0
50
36
24
28
12
1.91
28945--29008
32
2.0
32
84
0
83
21
20
26
31
1.98
36261--36293
6
5.5
6
100
0
66
0
15
0
84
0.61
39898--40003
53
2.0
54
96
1
196
49
19
15
16
1.80
40797--40828
7
4.6
7
100
0
64
12
31
25
31
1.92
41555--41583
2
14.5
2
100
0
58
0
48
0
51
1.00
48898--48968
31
2.3
31
80
0
79
18
19
26
35
1.95
48920--49020
53
1.9
53
89
0
157
15
16
27
39
1.90
50266--50343
31
2.6
31
78
8
90
23
29
12
34
1.92
50377--50451
38
2.0
38
100
0
150
33
26
24
16
1.95
52084--52133
24
2.1
24
100
0
100
20
16
34
30
1.94
58507--58623
59
2.0
61
91
3
193
39
7
10
42
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60203--60230
14
2.0
14
100
0
56
21
0
14
64
1.29
62938--62990
26
2.0
27
96
3
99
33
13
11
41
1.80
75559--75593
18
1.9
18
94
0
61
31
31
17
20
1.95
77944--78069
25
5.0
25
100
0
252
40
3
19
35
1.71
80107--80171
6
10.8
6
89
0
103
33
13
1
50
1.51
82528--82570
2
22.0
2
85
4
61
48
4
0
46
1.22
82627--82677
21
2.3
23
83
6
61
31
31
17
19
1.95
82927--82952
13
2.0
13
100
0
52
46
7
15
30
1.74
83982--84020
15
2.6
16
84
12
55
64
0
0
35
0.94
83982--84020
20
2.1
18
90
9
60
64
0
0
35
0.94
84328--84382
6
9.2
6
100
0
110
50
0
16
32
1.45
85654--85678
7
3.6
7
100
0
50
16
40
0
44
1.47
86415--86464
24
2.1
24
92
0
82
6
24
8
62
1.46
86262--86635
195
1.9
195
88
6
565
17
15
14
52
1.74
93236--93283
25
1.9
25
95
0
87
62
4
6
27
1.38
110769--110797
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!