Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014243.1 Corchorus capsularis cultivar CVL-1 contig14264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76200

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
707--941
85
2.8
85
97
0
434
39
17
18
24
1.92
8329--8393
17
4.2
16
81
16
68
30
7
3
58
1.42
8442--8595
4
38.5
4
71
12
66
28
5
1
64
1.22
8443--8483
18
2.3
18
86
0
55
34
0
0
65
0.93
8443--8593
24
6.3
24
69
13
87
29
5
1
64
1.24
8519--8568
25
1.9
26
88
8
75
22
6
2
70
1.20
10787--10820
17
2.0
17
88
0
50
14
0
2
82
0.79
15328--15470
70
2.0
70
97
0
268
34
12
9
43
1.74
19381--19414
2
17.5
2
90
6
52
44
0
0
55
0.99
22445--22499
28
2.0
28
85
7
76
36
10
32
20
1.87
28401--28435
18
1.9
18
100
0
70
48
17
5
28
1.69
33400--33433
3
11.7
3
93
6
61
0
29
0
70
0.87
41551--41592
2
21.0
2
95
0
75
50
2
0
47
1.14
46312--46353
9
4.5
10
80
14
54
0
23
0
76
0.79
46306--46351
20
2.2
21
88
11
69
0
23
2
73
0.94
46312--46395
6
14.0
6
73
17
52
4
19
0
76
0.96
46773--46917
74
1.9
75
85
1
202
30
21
11
37
1.88
47052--47101
3
16.7
3
100
0
100
32
0
0
68
0.90
51774--51894
27
4.3
28
77
16
108
18
19
1
60
1.45
51807--51992
26
7.2
25
72
23
122
20
21
1
55
1.51
51778--51896
57
2.1
55
83
11
154
19
20
1
58
1.47
51875--51915
19
2.2
19
86
8
57
17
24
0
58
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52183--52250
32
2.1
34
83
5
86
20
22
1
55
1.51
52393--52513
34
3.5
34
71
14
120
27
16
6
49
1.70
52301--52525
71
3.2
71
87
5
296
26
19
6
47
1.74
52470--52590
55
2.2
57
86
3
174
26
15
7
50
1.70
56187--56211
12
2.1
12
100
0
50
40
8
28
24
1.83
57065--57122
25
2.3
25
81
0
62
20
31
27
20
1.98
60243--60269
13
2.1
13
100
0
54
22
22
25
29
1.99
68237--68273
19
1.9
19
88
0
56
54
21
13
10
1.69
67260--69555
999
2.3
995
88
2
3333
35
15
15
34
1.89
71164--71197
11
3.2
10
84
15
50
50
17
2
29
1.61
71425--74599
995
3.2
987
86
3
4565
35
14
15
34
1.88
75360--75399
2
18.5
2
85
14
53
47
5
2
45
1.38
75510--75582
36
2.0
36
97
0
137
24
23
17
34
1.96

Tables:   1

The End!