Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014246.1 Corchorus capsularis cultivar CVL-1 contig14267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43606

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4620--4644
12
2.1
12
100
0
50
84
0
8
8
0.79
5778--5857
30
2.6
32
88
7
114
35
13
12
38
1.83
6261--6702
167
2.7
166
85
3
557
41
13
13
30
1.84
6835--6924
45
2.0
45
95
0
162
25
21
20
33
1.97
9238--9314
22
3.3
22
69
13
64
19
24
7
48
1.75
14834--14868
11
3.2
11
87
0
52
28
8
17
45
1.77
17028--17062
16
2.2
16
100
0
70
45
17
25
11
1.81
18131--18226
16
6.0
16
70
13
72
51
29
12
7
1.66
18137--18226
32
2.8
32
89
0
144
52
28
12
6
1.64
18377--18479
32
3.2
32
93
2
181
36
38
9
14
1.79
24004--24034
16
1.9
16
93
0
53
16
19
0
64
1.29
24092--24184
22
4.2
22
75
17
70
21
18
5
54
1.63
24143--24189
22
2.1
22
88
0
67
23
21
2
53
1.57
24440--24501
16
3.8
16
78
14
63
25
17
8
48
1.75
24481--24986
55
9.2
55
94
0
852
25
18
7
48
1.74
24481--24986
276
1.8
275
94
1
897
25
18
7
48
1.74
30374--30404
6
5.3
6
96
3
55
35
0
12
51
1.40
30983--31011
13
2.1
14
93
6
51
37
0
0
62
0.96
35253--35282
1
30.0
1
93
0
51
3
0
0
96
0.21
35697--35724
2
14.0
2
100
0
56
50
0
0
50
1.00
37532--37575
22
2.0
22
86
0
61
22
22
25
29
1.99
37529--37631
52
2.0
52
94
0
179
23
25
24
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40148--40201
23
2.3
23
100
0
108
25
40
25
7
1.82
40222--40304
42
2.0
42
90
0
130
22
40
27
8
1.83
41325--41361
10
3.5
11
78
14
51
83
2
0
13
0.74

Tables:   1

The End!