genome.fa.s14248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014248.1 Corchorus capsularis cultivar CVL-1 contig14269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125933

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6413--6463	2	25.5	2	91	0	84	0	45	3	50	1.20
8710--8809	34	3.0	32	70	15	85	57	6	7	30	1.50
9469--9493	11	2.3	11	100	0	50	36	16	12	36	1.85
10827--11071	51	4.9	51	74	8	180	40	2	15	41	1.60
10827--11062	100	2.4	100	77	5	226	41	2	15	40	1.60
10827--11071	49	4.9	50	74	7	167	40	2	15	41	1.60
11631--12267	35	18.8	35	80	9	544	37	9	18	34	1.83
18569--18654	34	2.5	35	84	5	122	22	25	22	30	1.99
18783--18876	36	2.6	36	83	3	118	15	13	32	37	1.88
18779--18981	107	1.9	107	82	8	252	16	17	29	36	1.92
20289--20313	11	2.3	11	100	0	50	36	16	12	36	1.85
21685--21731	20	2.4	20	89	3	69	40	0	12	46	1.42
21676--21901	49	4.5	48	77	10	172	41	2	15	40	1.61
21881--21946	35	1.9	35	84	9	91	37	4	12	45	1.62
21869--21952	33	2.6	31	75	17	89	40	4	10	44	1.60
22474--23185	35	20.7	35	82	7	650	37	9	18	33	1.84
28656--28704	21	2.3	21	78	0	62	26	40	20	12	1.87
36602--36738	56	2.4	56	80	2	148	43	8	16	32	1.77
38948--39123	92	1.9	92	96	0	325	30	12	15	41	1.84
39561--39603	6	7.3	6	82	12	54	2	13	0	83	0.74
45658--45706	25	2.0	25	83	0	62	38	12	10	38	1.77
47764--47820	30	1.9	30	85	7	80	22	26	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50065--50107	17	2.6	16	85	3	50	74	6	9	9	1.22
50219--50260	22	1.9	23	85	9	61	16	14	40	28	1.88
60858--60887	13	2.3	13	94	0	51	20	16	40	23	1.91
67135--67178	21	2.1	21	83	4	54	65	6	20	6	1.39
69084--69112	8	3.6	8	100	0	58	62	0	37	0	0.96
72596--72639	3	14.7	3	90	0	70	61	0	38	0	0.96
76959--76990	3	10.7	3	100	0	64	0	0	65	34	0.93
77627--77671	22	2.0	22	87	8	65	35	8	6	48	1.61
79219--79243	13	1.9	13	100	0	50	24	20	16	40	1.91
79189--79339	48	3.2	46	88	3	203	19	11	25	43	1.85
81650--81684	3	11.7	3	100	0	70	31	0	0	68	0.90
81987--82016	1	30.0	1	100	0	60	0	0	0	100	0.00
82268--82476	46	4.6	45	74	18	184	10	27	22	40	1.86
85707--85802	48	2.0	48	93	0	165	23	11	27	37	1.89
88618--88725	39	2.8	37	81	16	121	17	12	27	42	1.85
92125--92332	104	2.0	104	100	0	416	29	12	22	35	1.91
96172--96323	37	4.2	36	93	4	243	28	21	10	38	1.87
96335--96476	69	2.0	70	97	1	268	24	26	7	40	1.82
96317--96508	107	1.8	106	89	3	305	25	27	8	39	1.84
96316--96509	37	5.4	37	82	8	229	24	27	8	39	1.85
96532--96644	36	3.2	34	79	10	102	27	11	11	49	1.73
96633--96884	41	6.4	40	73	14	213	25	19	11	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96677--96883	77	2.7	76	88	3	317	26	18	10	44	1.82
96898--97635	37	19.7	37	83	8	775	24	19	10	45	1.81
97621--97756	41	3.5	40	83	10	174	26	22	11	39	1.88
98109--98147	18	2.2	18	100	0	78	41	10	10	38	1.73
101105--101178	26	2.7	27	75	18	66	43	21	16	18	1.88
103067--103159	46	2.0	46	100	0	186	40	10	21	26	1.86
108893--108994	26	3.7	26	74	24	84	38	26	13	21	1.91
108889--109110	58	3.9	55	76	13	209	40	26	13	20	1.89
109032--109125	30	3.1	30	77	11	102	38	29	12	19	1.89
117542--117638	29	3.3	29	67	16	90	35	18	19	26	1.95
117534--117680	60	2.5	60	93	2	242	36	17	19	27	1.94
118253--118286	15	2.1	16	89	10	52	79	5	0	14	0.91
120173--120262	45	2.0	45	95	0	162	33	20	22	24	1.97
121109--121420	164	1.9	164	86	5	452	29	13	17	40	1.87
124935--124995	16	3.8	16	80	8	79	6	14	37	40	1.72
124988--125037	17	2.9	17	78	0	55	6	20	46	28	1.74
125754--125784	2	16.0	2	93	6	55	51	0	0	48	1.00

Tables:   1

The End!