Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014251.1 Corchorus capsularis cultivar CVL-1 contig14272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97579

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121--162
22
1.9
22
90
9
68
21
47
21
9
1.79
9770--9804
15
2.2
15
90
10
52
82
0
11
5
0.82
21852--21946
34
2.9
33
89
4
138
25
28
21
25
1.99
25589--25847
106
2.5
104
88
3
373
40
9
8
41
1.69
25567--25871
106
2.9
103
82
6
332
40
9
8
41
1.68
27067--27110
21
2.1
21
83
8
54
18
31
9
40
1.81
27158--27349
33
5.9
33
88
1
219
15
43
29
11
1.81
27407--27536
33
3.9
33
77
4
102
15
34
38
11
1.83
27404--27534
66
2.0
66
80
8
151
15
33
38
12
1.84
27543--27623
33
2.5
31
76
11
83
12
41
29
16
1.84
30502--30602
50
2.0
50
100
0
202
37
4
21
35
1.75
35094--35129
16
2.2
16
90
0
54
25
5
38
30
1.78
36912--36999
16
5.5
16
76
10
81
37
36
18
7
1.80
36982--37027
22
2.0
23
87
4
67
45
26
15
13
1.82
37518--37599
42
2.0
42
95
0
146
42
14
6
36
1.71
37811--37927
48
2.5
47
83
6
130
33
37
21
7
1.82
37778--37928
63
2.4
63
83
9
193
33
38
20
7
1.80
37778--37929
16
9.6
16
75
8
114
34
38
20
7
1.80
43311--43358
18
2.7
18
84
9
55
62
2
2
33
1.18
43289--43374
42
2.0
43
82
10
106
60
1
1
37
1.12
43867--43892
11
2.4
11
100
0
52
92
0
7
0
0.39
45318--45355
16
2.4
17
87
12
55
7
15
39
36
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46708--46782
16
4.8
16
83
3
107
5
14
40
40
1.69
46708--46782
31
2.4
32
90
2
116
5
14
40
40
1.69
47909--48016
21
5.1
21
70
8
85
25
28
10
36
1.88
47816--48007
42
4.6
42
92
0
276
22
31
9
36
1.86
49297--49337
20
2.0
21
90
9
68
48
2
0
48
1.14
50542--50599
29
2.0
29
93
3
100
41
18
18
20
1.91
50768--50835
28
2.4
28
95
2
118
47
5
10
36
1.62
50991--51024
17
2.0
17
94
0
59
44
20
11
23
1.84
51534--51685
78
2.0
77
90
1
241
35
17
23
24
1.95
53618--53749
66
2.0
66
93
0
228
28
18
32
20
1.96
54160--54200
21
2.0
21
95
4
75
39
0
0
60
0.96
54644--54697
15
3.4
16
80
12
58
55
0
1
42
1.10
54639--54696
28
2.0
29
83
9
75
51
1
1
44
1.21
58519--58565
23
2.0
23
84
16
60
34
12
2
51
1.52
58605--58901
149
2.0
151
93
2
508
34
9
5
51
1.57
77902--77938
13
2.8
13
91
0
65
35
8
40
16
1.78
79298--79324
2
13.5
2
100
0
54
51
0
0
48
1.00
79355--79727
186
2.0
186
94
3
662
35
18
7
38
1.80
86962--87000
20
2.0
20
94
0
69
53
25
5
15
1.62
87646--87763
59
2.0
59
94
0
209
23
19
7
49
1.74
88261--88302
21
2.0
21
81
9
50
4
21
7
66
1.35
89919--90047
31
4.5
31
72
16
123
33
26
22
17
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89983--90078
31
3.1
31
81
3
104
34
26
19
19
1.96
92450--92501
27
1.9
27
84
0
68
32
34
1
30
1.69
95149--95173
6
4.2
6
100
0
50
68
16
16
0
1.22
96411--96443
15
2.2
15
100
0
66
6
18
21
54
1.64
97081--97127
22
2.1
22
96
0
85
42
4
6
46
1.48
97081--97123
11
3.9
11
90
0
68
41
4
6
46
1.51
97262--97296
2
17.0
2
94
5
61
48
0
2
48
1.16

Tables:   1

The End!