Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014259.1 Corchorus capsularis cultivar CVL-1 contig14280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60497

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5744--5777
14
2.4
14
85
0
50
20
0
38
41
1.53
8516--8688
85
2.0
85
96
2
321
43
17
10
28
1.81
11700--11768
32
2.2
32
86
2
95
15
24
28
30
1.96
11804--11877
28
2.5
29
82
12
89
47
13
14
24
1.81
14949--15024
22
3.5
22
81
3
82
35
15
11
36
1.85
14954--15056
22
4.7
23
74
4
70
39
16
8
34
1.80
15222--15259
19
2.0
20
85
15
53
60
2
5
31
1.33
15389--15465
37
2.1
36
85
7
102
58
11
15
14
1.63
17223--17256
1
34.0
1
100
0
68
100
0
0
0
0.00
19589--19636
22
2.3
20
86
10
62
39
25
16
18
1.91
19556--19658
53
1.9
53
92
0
170
37
26
18
17
1.93
19608--19705
31
3.2
31
88
1
135
33
27
20
18
1.96
24254--24303
24
2.1
24
100
0
100
46
16
4
34
1.65
27311--27348
2
18.5
2
89
5
58
52
0
2
44
1.14
30811--30918
31
3.5
31
78
5
139
32
18
20
28
1.96
30946--31077
60
2.2
60
90
2
203
29
19
16
34
1.94
30948--31046
29
3.3
29
67
15
85
30
20
15
34
1.93
34056--34191
31
4.8
29
78
17
151
16
20
27
35
1.94
38129--38199
32
2.2
33
77
7
83
19
11
33
35
1.88
38143--38208
16
4.2
15
75
9
60
19
9
36
34
1.84
38149--38225
32
2.4
32
91
0
118
15
7
37
38
1.77
38167--38215
16
3.1
16
77
11
55
16
8
36
38
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38384--38427
16
2.7
17
82
10
65
9
9
27
54
1.62
39691--39756
28
2.4
28
89
0
105
46
4
21
27
1.70
40482--40547
28
2.4
28
89
0
105
46
4
21
27
1.70
42557--42589
15
2.1
16
88
11
50
63
15
0
21
1.30
44777--44819
2
22.0
2
95
4
79
48
0
0
51
1.00
44853--44915
30
2.1
30
96
0
117
31
15
25
26
1.96
47256--47288
6
5.7
6
89
3
50
54
15
30
0
1.41
50115--50187
29
2.5
28
80
8
92
17
27
17
36
1.93
50390--50456
29
2.3
30
82
7
84
37
16
28
17
1.92
52913--52960
24
2.0
24
100
0
96
16
20
4
58
1.55
53231--53283
20
2.7
20
100
0
106
30
30
11
28
1.91
56290--56499
76
2.8
75
91
2
316
33
20
14
32
1.92

Tables:   1

The End!