Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001426.1 Corchorus capsularis cultivar CVL-1 contig01426, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7249
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35


Found at i:44 original size:34 final size:34

Alignment explanation


    Indices: 1--65  Score: 121
    Period size: 34  Copynumber: 1.9  Consensus size: 34

                                *             
          1 ATCCGGGTGGGACTTGGGTCGCGGGCGGGTCGCG
          1 ATCCGGGTGGGACTTGGGTCACGGGCGGGTCGCG

                                           
         35 ATCCGGGTGGGACTTGGGTCACGGGCGGGTC
          1 ATCCGGGTGGGACTTGGGTCACGGGCGGGTC

         66 TCGACCCGCC


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   30  1.00

ACGTcount: A:0.08, C:0.23, G:0.51, T:0.18


Consensus pattern (34 bp):   
ATCCGGGTGGGACTTGGGTCACGGGCGGGTCGCG

Found at i:7174 original size:10 final size:10

Alignment explanation


    Indices: 7159--7190  Score: 64
    Period size: 10  Copynumber: 3.2  Consensus size: 10

       7149 TATCTTAGTC

                      
       7159 ATCTTAACTT
          1 ATCTTAACTT

                      
       7169 ATCTTAACTT
          1 ATCTTAACTT

                      
       7179 ATCTTAACTT
          1 ATCTTAACTT

              
       7189 AT
          1 AT

       7191 ATATAAAACC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   22  1.00

ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50


Consensus pattern (10 bp):   
ATCTTAACTT
Done.