Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014260.1 Corchorus capsularis cultivar CVL-1 contig14281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40667

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
338--376
19
2.1
19
100
0
78
41
20
10
28
1.85
2355--2383
2
15.0
2
92
7
51
51
0
0
48
1.00
13766--13806
2
21.5
2
82
9
50
46
4
0
48
1.23
14439--14593
70
2.2
71
88
4
235
51
0
11
36
1.43
14783--14933
70
2.2
70
90
3
234
51
0
11
36
1.43
14357--15032
340
2.0
336
98
1
1300
49
5
10
34
1.60
15730--15758
15
1.9
15
100
0
58
20
20
17
41
1.90
21429--21477
25
2.0
25
87
0
71
22
12
18
46
1.82
23156--23182
13
2.1
13
100
0
54
33
44
0
22
1.53
24990--25022
17
1.9
17
93
0
57
9
3
51
36
1.49
25502--25557
26
2.2
26
90
0
85
35
3
17
42
1.67
25516--25567
26
2.0
26
81
7
61
46
5
15
32
1.70
29149--29413
41
6.4
41
88
2
341
37
17
14
30
1.90
29149--29413
126
2.1
123
85
2
341
37
17
14
30
1.90

Tables:   1

The End!