Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014264.1 Corchorus capsularis cultivar CVL-1 contig14285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10492
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32


Found at i:199 original size:15 final size:15

Alignment explanation


    Indices: 160--206  Score: 51
    Period size: 15  Copynumber: 3.1  Consensus size: 15

        150 TTTATAAACA

                      *   * 
        160 AAAATAAAATTTCAAT
          1 AAAATAAAATAT-ATT

                *          
        176 AAAAGAAAATATATT
          1 AAAATAAAATATATT

                           
        191 AAAATAAAATAT-TT
          1 AAAATAAAATATATT

              
        205 AA
          1 AA

        207 TTTTTATTCC


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  14    4  0.15
  15   13  0.48
  16   10  0.37

ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30


Consensus pattern (15 bp):   
AAAATAAAATATATT

Found at i:5087 original size:7 final size:7

Alignment explanation


    Indices: 5075--5099  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       5065 TTAACTAAAG

                   
       5075 CATGAAA
          1 CATGAAA

                   
       5082 CATGAAA
          1 CATGAAA

                   
       5089 CATGAAA
          1 CATGAAA

                
       5096 CATG
          1 CATG

       5100 GCAGCTTTCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16


Consensus pattern (7 bp):   
CATGAAA
Done.