Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014266.1 Corchorus capsularis cultivar CVL-1 contig14287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55144

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
526--569
21
2.2
20
84
12
54
38
6
13
40
1.71
7996--8051
15
3.7
15
95
0
94
8
23
25
42
1.82
15255--15317
20
3.1
20
84
4
81
22
7
15
53
1.67
15258--15318
21
3.0
21
85
2
79
22
8
14
54
1.67
15282--15329
21
2.3
21
89
7
71
22
6
10
60
1.52
18211--18310
50
2.0
50
98
0
191
27
26
17
30
1.97
23185--23278
38
2.5
38
84
3
109
18
17
23
41
1.90
29681--29719
6
6.5
6
87
0
60
53
12
0
33
1.39
29681--29731
24
2.1
24
82
7
59
52
11
3
31
1.56
30646--30670
10
2.5
10
100
0
50
24
8
20
48
1.76
35547--35603
30
1.9
30
85
7
80
33
17
7
42
1.76
37725--37751
2
13.5
2
100
0
54
48
0
51
0
1.00
38861--38960
41
2.4
41
88
0
146
37
13
22
28
1.91
44319--44361
18
2.3
19
80
15
54
30
2
30
37
1.70

Tables:   1

The End!