Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001427.1 Corchorus capsularis cultivar CVL-1 contig01427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1400
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:508 original size:16 final size:17

Alignment explanation


    Indices: 487--523  Score: 58
    Period size: 16  Copynumber: 2.2  Consensus size: 17

        477 CCATCACAAT

                       *     
        487 TCACCTTGAACCAA-CC
          1 TCACCTTGAACAAACCC

                             
        503 TCACCTTGAACAAACCC
          1 TCACCTTGAACAAACCC

                
        520 TCAC
          1 TCAC

        524 TTTGGGCTTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  16   13  0.68
  17    6  0.32

ACGTcount: A:0.32, C:0.43, G:0.05, T:0.19


Consensus pattern (17 bp):   
TCACCTTGAACAAACCC

Done.