Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014271.1 Corchorus capsularis cultivar CVL-1 contig14292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71065

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--35
2
13.5
2
100
0
54
48
0
0
51
1.00
3291--3342
22
2.4
22
84
12
63
28
17
13
40
1.87
3466--3744
22
12.5
22
69
8
134
35
13
12
39
1.82
3574--3661
46
1.9
46
84
9
117
37
14
9
38
1.78
3464--3744
43
6.3
43
73
9
143
35
13
12
39
1.81
6167--6198
16
2.0
16
100
0
64
43
18
25
12
1.85
8412--8548
63
2.2
64
93
1
231
48
14
19
16
1.80
9305--9336
16
2.0
16
100
0
64
43
18
25
12
1.85
19749--19780
15
2.1
15
94
0
55
0
37
3
59
1.13
19754--19888
33
4.4
30
71
16
98
0
31
10
57
1.37
19784--19837
15
3.7
15
72
20
51
1
27
5
64
1.26
19812--19849
18
2.1
18
90
0
58
0
26
10
63
1.27
19784--19889
33
3.3
33
78
8
103
0
30
9
59
1.35
19869--19903
15
2.3
15
90
0
52
0
28
14
57
1.38
27860--27898
20
1.9
21
85
15
55
43
25
0
30
1.55
34194--34254
30
2.0
30
100
0
122
39
8
32
19
1.81
37096--37191
47
2.0
47
100
0
192
37
15
6
40
1.73
37314--37525
21
9.1
21
73
19
154
33
20
16
30
1.94
37314--37525
49
4.5
46
71
19
161
33
20
16
30
1.94
37405--37489
28
3.0
28
96
0
152
34
17
16
31
1.93
37335--37525
98
1.9
98
91
0
310
33
19
16
30
1.94
37626--37723
21
4.7
21
80
9
110
35
21
14
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37466--37850
164
2.4
161
84
4
481
33
23
13
30
1.93
37783--37866
21
4.0
21
81
6
98
35
23
14
26
1.93
38134--38164
15
2.1
15
100
0
62
48
6
0
45
1.28
39667--40008
166
2.1
167
84
0
443
30
14
14
39
1.86
41515--41622
45
2.4
45
100
0
216
48
20
15
15
1.82
44333--44363
2
15.5
2
100
0
62
51
0
0
48
1.00
44933--45047
31
3.7
31
83
3
151
37
26
20
16
1.93
44933--45062
61
2.1
62
94
2
226
35
27
20
16
1.94
45574--45750
88
2.0
88
90
2
275
25
24
22
28
1.99
57702--57878
88
2.0
88
93
2
302
25
23
22
28
1.99
60836--60909
11
6.7
11
83
11
89
56
10
21
10
1.64
60836--60909
33
2.2
33
86
9
98
56
10
21
10
1.64
60835--61005
22
7.5
22
78
9
119
49
9
19
20
1.76
60956--60995
11
3.6
11
86
0
62
42
12
20
25
1.86
61005--61270
71
3.8
68
81
9
250
43
9
21
25
1.83
60997--61285
107
2.7
106
85
7
359
44
9
21
24
1.81
61000--61285
35
7.9
35
79
9
247
44
9
21
25
1.82
61284--61402
36
3.4
34
74
17
120
47
6
17
27
1.73
62652--62696
22
2.0
22
100
0
90
53
8
11
26
1.65
63754--63833
30
2.6
30
84
2
97
25
25
12
37
1.91
63777--63835
30
2.0
30
93
0
100
20
20
15
44
1.87
66042--66094
2
27.0
2
86
3
72
43
1
1
52
1.23

Tables:   1

The End!