Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014278.1 Corchorus capsularis cultivar CVL-1 contig14299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24126

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3730--3754
9
2.8
9
100
0
50
44
0
56
0
0.99
4627--4683
20
2.7
21
86
5
80
47
8
24
19
1.77
4714--4790
21
3.7
20
80
13
93
46
5
24
23
1.72
4712--4863
20
7.2
20
73
16
78
51
5
21
22
1.67
4712--4802
41
2.2
41
90
7
141
47
5
23
24
1.72
4821--4878
7
8.3
7
79
7
55
60
3
18
17
1.50
4746--5215
22
21.8
22
69
14
200
52
4
21
21
1.63
4712--5243
42
12.9
43
68
17
222
52
3
22
21
1.63
5075--5271
22
9.8
20
71
18
99
52
4
22
20
1.63
5026--5238
22
10.0
21
69
16
82
53
3
21
22
1.61
5188--5493
7
45.1
7
67
17
139
56
2
24
16
1.53
5232--5509
46
6.2
47
75
14
266
55
2
25
16
1.53
5296--5582
81
3.5
79
77
11
296
55
3
25
16
1.56
5254--5552
128
2.3
127
86
5
397
54
2
26
16
1.55
22822--22860
15
2.5
15
87
4
51
25
5
5
64
1.35

Tables:   1

The End!