Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014279.1 Corchorus capsularis cultivar CVL-1 contig14300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63098

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
731--785
25
2.2
25
90
6
85
30
30
21
16
1.95
744--798
25
2.2
25
83
0
65
30
25
21
21
1.98
3477--3512
18
2.1
17
94
5
63
63
8
16
11
1.49
3975--3999
10
2.5
10
100
0
50
28
8
24
40
1.83
8503--8538
19
1.9
18
88
5
54
41
2
22
33
1.68
12236--12272
6
6.3
6
96
3
67
35
0
13
51
1.41
12565--12620
27
2.0
28
83
10
71
60
5
7
26
1.44
19766--19819
25
2.2
25
100
0
108
29
7
25
37
1.83
21133--21199
25
2.7
25
90
4
100
29
28
20
20
1.98
25394--25500
53
2.0
53
92
0
178
41
6
9
42
1.63
26015--26082
3
23.0
3
85
8
68
57
0
2
39
1.14
25991--26098
41
2.7
41
84
8
127
50
0
2
46
1.15
26027--26092
32
2.0
32
91
8
105
51
0
3
45
1.16
26081--26110
3
10.0
3
100
0
60
33
0
0
66
0.92
31612--31651
14
2.7
14
88
7
53
12
5
35
47
1.63
42153--42185
2
16.5
2
93
0
57
48
3
0
48
1.17
46429--46497
29
2.4
29
90
0
111
37
11
23
27
1.89
48035--48060
12
2.2
12
100
0
52
57
0
26
15
1.38
48866--48923
29
2.0
30
82
3
73
37
5
18
37
1.74
56209--56253
21
2.1
21
95
0
81
17
42
8
31
1.80
56541--56612
11
5.4
15
66
25
54
31
1
12
54
1.47
56545--56612
26
2.6
26
95
0
118
33
1
11
52
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56622--56680
25
2.4
25
88
5
86
42
0
22
35
1.54
56751--56794
21
2.1
21
95
0
79
29
9
43
18
1.80
61890--61931
20
2.1
20
90
0
66
61
0
0
38
0.96

Tables:   1

The End!