Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014283.1 Corchorus capsularis cultivar CVL-1 contig14304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:2449 original size:18 final size:19

Alignment explanation


    Indices: 2420--2455  Score: 65
    Period size: 18  Copynumber: 1.9  Consensus size: 19

       2410 CAACGGTAGA

                               
       2420 AAGAGTAAAGGAGAGAGAG
          1 AAGAGTAAAGGAGAGAGAG

                              
       2439 AAGAG-AAAGGAGAGAGA
          1 AAGAGTAAAGGAGAGAGA

       2456 AAAAGTGGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  18   12  0.71
  19    5  0.29

ACGTcount: A:0.56, C:0.00, G:0.42, T:0.03


Consensus pattern (19 bp):   
AAGAGTAAAGGAGAGAGAG

Found at i:7870 original size:2 final size:2

Alignment explanation


    Indices: 7863--7889  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       7853 GCTATATGTA

                                                    
       7863 TG TG TG TG TG TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG T

       7890 ATTTTATATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52


Consensus pattern (2 bp):   
TG

Done.