Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014297.1 Corchorus capsularis cultivar CVL-1 contig14318, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8765

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1097--1499
57
6.7
59
78
7
374
40
16
19
23
1.91
1078--1499
121
3.5
119
78
10
466
40
15
19
23
1.90
1735--1853
63
1.9
62
84
5
159
47
13
15
23
1.80
1829--2067
38
6.7
36
82
9
219
43
13
15
27
1.84
1792--2067
76
3.9
70
77
11
213
43
14
15
26
1.84
1896--2062
32
4.9
32
86
11
226
41
14
16
28
1.87
2434--2534
49
2.1
49
90
0
157
34
23
19
21
1.96
2370--2594
119
1.9
119
87
3
328
36
22
19
22
1.96
2482--2675
71
2.8
70
81
1
235
37
21
19
21
1.94
2372--2722
190
1.9
188
87
3
526
36
22
19
21
1.95
2628--2822
49
4.0
49
83
2
248
37
24
16
21
1.94
2629--2820
98
2.0
98
91
2
314
37
23
17
21
1.94
4546--4592
6
8.0
6
88
6
62
0
2
14
82
0.75
4546--4587
19
2.3
18
84
11
59
0
2
16
80
0.81
5218--5274
14
4.3
13
82
10
71
42
14
7
36
1.72
5338--5408
27
2.7
26
82
10
81
2
16
0
80
0.83
5338--5408
28
2.6
27
84
6
99
2
16
0
80
0.83
6450--6550
42
2.4
42
81
3
123
38
11
24
24
1.89

Tables:   1

The End!