Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001430.1 Corchorus capsularis cultivar CVL-1 contig01430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41


Found at i:1105 original size:5 final size:5

Alignment explanation


    Indices: 1095--1132  Score: 69
    Period size: 5  Copynumber: 7.8  Consensus size: 5

       1085 TCGGGCATCT

                                                          
       1095 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT- TTTT
          1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT

       1133 GCTCTCCGTG


Statistics
Matches: 33,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   4    4  0.12
   5   29  0.88

ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84


Consensus pattern (5 bp):   
TTTTA

Done.