Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014300.1 Corchorus capsularis cultivar CVL-1 contig14321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25229
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Found at i:6388 original size:20 final size:19
Alignment explanation
Indices: 6363--6406 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
6353 ATCTCGATTT
6363 CATTATTCACTTTAACTTTA
1 CATTATTCACTTTAAC-TTA
*
6383 CATTATTCACTTTAGCTTA
1 CATTATTCACTTTAACTTA
6402 CATTA
1 CATTA
6407 GCATGTTGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.30, C:0.20, G:0.02, T:0.48
Consensus pattern (19 bp):
CATTATTCACTTTAACTTA
Found at i:11189 original size:53 final size:53
Alignment explanation
Indices: 11126--11326 Score: 213
Period size: 53 Copynumber: 4.0 Consensus size: 53
11116 ACACATGTTG
* * * * *
11126 AATTCGGAGTAATTAACCTAAGCAGCAAAAGGGGAAGATCAGTAAATAGGTTT
1 AATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAGATCAGTAAACAGGTCT
* * *
11179 AATTCAGAGTAATTAACCTAAGAAGT---A--A-AAG--CTGTAAACATGTCT
1 AATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAGATCAGTAAACAGGTCT
* * *
11224 AATTCAGAGTAATTAACCTAAGCAGTAAAAAGAGAAAATTAGTAAACAGGTCT
1 AATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAGATCAGTAAACAGGTCT
* * *
11277 AATTCAGAGTAATTAACCTAAGCAGTGAAAGGAGTA-ATCAGTAAATAGGT
1 AATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAGATCAGTAAACAGGT
11327 AGCAAAATTA
Statistics
Matches: 122, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
45 35 0.29
47 3 0.02
48 1 0.01
50 2 0.02
51 2 0.02
52 12 0.10
53 67 0.55
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.24
Consensus pattern (53 bp):
AATTCAGAGTAATTAACCTAAGCAGTAAAAGGAGAAGATCAGTAAACAGGTCT
Found at i:11268 original size:98 final size:98
Alignment explanation
Indices: 11118--11307 Score: 274
Period size: 98 Copynumber: 1.9 Consensus size: 98
11108 GACAGTGAAC
* * * * * *
11118 ACATGTTGAATTCGGAGTAATTAACCTAAGCAGCAAAAGGGGAAGATCAGTAAATAGGTTTAATT
1 ACATGTTGAATTCAGAGTAATTAACCTAAGCAGCAAAAAGAGAAAATCAGTAAACAGGTCTAATT
11183 CAGAGTAATTAACCTAAGAAGTAAAAGCTGTAA
66 CAGAGTAATTAACCTAAGAAGTAAAAGCTGTAA
* *
11216 ACATGTCT-AATTCAGAGTAATTAACCTAAGCAGTAAAAAGAGAAAATTAGTAAACAGGTCTAAT
1 ACATGT-TGAATTCAGAGTAATTAACCTAAGCAGCAAAAAGAGAAAATCAGTAAACAGGTCTAAT
* *
11280 TCAGAGTAATTAACCTAAGCAGTGAAAG
65 TCAGAGTAATTAACCTAAGAAGTAAAAG
11308 GAGTAATCAG
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
98 80 0.99
99 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.24
Consensus pattern (98 bp):
ACATGTTGAATTCAGAGTAATTAACCTAAGCAGCAAAAAGAGAAAATCAGTAAACAGGTCTAATT
CAGAGTAATTAACCTAAGAAGTAAAAGCTGTAA
Found at i:11518 original size:57 final size:55
Alignment explanation
Indices: 11439--11631 Score: 199
Period size: 49 Copynumber: 3.6 Consensus size: 55
11429 GCAATTAAAT
* *
11439 TAAAAAGAGTAAAAGGAGGAGTAAT-AGTAGAGTAGTTTAATTCAGAGTAATT-AGAC
1 TAAAAA-AGTAAAAGAAAGAGTAATCAGTAGA-TAGTTTAATTCAGAGTAATTAAG-C
* *
11495 TAAAAAAAAGTAAAAGAAAGAGTAATCAGCAGATAGCTTAATTCAGAGTAATTAAGC
1 T--AAAAAAGTAAAAGAAAGAGTAATCAGTAGATAGTTTAATTCAGAGTAATTAAGC
11552 T---AAAG---AAGAAAGAGTAAGT-AGTA-ATTAGTTTAATTCAGAGTAATTAAGC
1 TAAAAAAGTAAAAGAAAGAGTAA-TCAGTAGA-TAGTTTAATTCAGAGTAATTAAGC
* *
11601 TAAAGAAGTAAAAGGAAGAGTAATCAGTAGA
1 TAAAAAAGTAAAAGAAAGAGTAATCAGTAGA
11632 AAGGAGTGAA
Statistics
Matches: 115, Mismatches: 8, Indels: 28
0.76 0.05 0.19
Matches are distributed among these distances:
48 1 0.01
49 39 0.34
50 1 0.01
52 7 0.06
54 1 0.01
55 15 0.13
56 2 0.02
57 37 0.32
58 12 0.10
ACGTcount: A:0.50, C:0.05, G:0.22, T:0.23
Consensus pattern (55 bp):
TAAAAAAGTAAAAGAAAGAGTAATCAGTAGATAGTTTAATTCAGAGTAATTAAGC
Found at i:11634 original size:29 final size:31
Alignment explanation
Indices: 11602--11664 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 31
11592 TAATTAAGCT
* *
11602 AAAGAAGT-AAA-AGGAAGAGTAATCAGTAG
1 AAAGAAGTAAAATAAGAAAAGTAATCAGTAG
*
11631 AAAGGAGTGAAAATAAGAAAAGTAATCAGTAG
1 AAAGAAGT-AAAATAAGAAAAGTAATCAGTAG
11663 AA
1 AA
11665 GAAAAAGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.25
31 3 0.11
32 18 0.64
ACGTcount: A:0.57, C:0.03, G:0.25, T:0.14
Consensus pattern (31 bp):
AAAGAAGTAAAATAAGAAAAGTAATCAGTAG
Found at i:11709 original size:30 final size:33
Alignment explanation
Indices: 11602--11785 Score: 113
Period size: 36 Copynumber: 5.3 Consensus size: 33
11592 TAATTAAGCT
*
11602 AAAGAAGTAAAAGGAAGAGTAATCAGTAG-A-AA
1 AAAG-AGTAAAAGAAAGAGTAATCAGTAGAAGAA
** * *
11634 GGAGTGAAAATAAGAAA-AGTAATCAGTAGAAGAA
1 AAAGAG-TAA-AAGAAAGAGTAATCAGTAGAAGAA
* * *
11668 AAAGAGTAAGAGTAAAAGAAATAATCAGTGGAAGAA
1 AAAGAGTAAAAG--AAAG-AGTAATCAGTAGAAGAA
* *
11704 AAAGAGGAAAAGTAAAAGGAGTAATCAGTAGAAGTA
1 AAAGAGTAAAAG--AAA-GAGTAATCAGTAGAAGAA
* * *
11740 AAAGAGTAAAAGTAAGAGGAGTGATCAGTAAAAGTA
1 AAAGAGTAAAAG-AA-A-GAGTAATCAGTAGAAGAA
11776 AAAGAAGTAA
1 AAAG-AGTAA
11786 TCAGTAGAAG
Statistics
Matches: 120, Mismatches: 21, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
31 1 0.01
32 18 0.15
33 8 0.07
34 8 0.07
35 2 0.02
36 77 0.64
37 6 0.05
ACGTcount: A:0.57, C:0.03, G:0.26, T:0.14
Consensus pattern (33 bp):
AAAGAGTAAAAGAAAGAGTAATCAGTAGAAGAA
Found at i:11741 original size:22 final size:22
Alignment explanation
Indices: 11713--11806 Score: 80
Period size: 22 Copynumber: 4.7 Consensus size: 22
11703 AAAAGAGGAA
11713 AAGTAAAAGGAGTAATCAGTAG
1 AAGTAAAAGGAGTAATCAGTAG
11735 AAGTAAAA-GAG---T-A--A-
1 AAGTAAAAGGAGTAATCAGTAG
* * *
11749 AAGTAAGAGGAGTGATCAGTAA
1 AAGTAAAAGGAGTAATCAGTAG
*
11771 AAGTAAAAGAAGTAATCAGTAG
1 AAGTAAAAGGAGTAATCAGTAG
*
11793 AAGTGAAA-GAGTAA
1 AAGTAAAAGGAGTAA
11807 AAGAAGAAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
14 7 0.12
15 4 0.07
17 1 0.02
18 2 0.04
19 1 0.02
21 9 0.16
22 33 0.58
ACGTcount: A:0.53, C:0.03, G:0.27, T:0.17
Consensus pattern (22 bp):
AAGTAAAAGGAGTAATCAGTAG
Found at i:11760 original size:36 final size:36
Alignment explanation
Indices: 11651--11785 Score: 171
Period size: 36 Copynumber: 3.7 Consensus size: 36
11641 AAATAAGAAA
* *
11651 AGTAATCAGTAGAAGAAAAAGAGTAAGAGTAAAAGA
1 AGTAATCAGTAGAAGAAAAAGAGTAAAAGTAAAAGG
* * *
11687 AATAATCAGTGGAAGAAAAAGAGGAAAAGTAAAAGG
1 AGTAATCAGTAGAAGAAAAAGAGTAAAAGTAAAAGG
* *
11723 AGTAATCAGTAGAAGTAAAAGAGTAAAAGTAAGAGG
1 AGTAATCAGTAGAAGAAAAAGAGTAAAAGTAAAAGG
* * *
11759 AGTGATCAGTAAAAGTAAAAGAAGTAA
1 AGTAATCAGTAGAAGAAAAAG-AGTAA
11786 TCAGTAGAAG
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
36 81 0.94
37 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.26, T:0.15
Consensus pattern (36 bp):
AGTAATCAGTAGAAGAAAAAGAGTAAAAGTAAAAGG
Found at i:11773 original size:58 final size:58
Alignment explanation
Indices: 11711--11827 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 58
11701 GAAAAAGAGG
* * *
11711 AAAAGTAAAAGGAGTAATCAGTAGAAGTAAAAGAGTAAAAGTAAG-AGGAGTGATCAGT
1 AAAAGTAAAAGAAGTAATCAGTAGAAGTAAAAGAGTAAAAG-AAGAAGAAGTAATCAGT
*
11769 AAAAGTAAAAGAAGTAATCAGTAGAAGTGAAAGAGTAAAAGAAGAAGAAGTAATCAGT
1 AAAAGTAAAAGAAGTAATCAGTAGAAGTAAAAGAGTAAAAGAAGAAGAAGTAATCAGT
11827 A
1 A
11828 GAAAAGAGTA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 3 0.06
58 51 0.94
ACGTcount: A:0.55, C:0.03, G:0.26, T:0.16
Consensus pattern (58 bp):
AAAAGTAAAAGAAGTAATCAGTAGAAGTAAAAGAGTAAAAGAAGAAGAAGTAATCAGT
Found at i:11776 original size:94 final size:90
Alignment explanation
Indices: 11672--11844 Score: 231
Period size: 94 Copynumber: 1.9 Consensus size: 90
11662 GAAGAAAAAG
* * *
11672 AGTAAGAGTAAAAGAAATAATCAGTGGAAGAAAAAGAGGAAAAGTAA-AAGGAGTAATCAGTAGA
1 AGTAAAAGTAAAAGAAATAATCAGTAGAAGAAAAAGAGGAAAAG-AAGAAGAAGTAATCAGT---
11736 AGTAAAAGAGTAAAAGTAAGAGGAGTGATC
62 AG-AAAAGAGTAAAAGTAAGAGGAGTGATC
* ** *
11766 AGTAAAAGTAAAAGAAGTAATCAGTAGAAGTGAAAGAGTAAAAGAAGAAGAAGTAATCAGTAGAA
1 AGTAAAAGTAAAAGAAATAATCAGTAGAAGAAAAAGAGGAAAAGAAGAAGAAGTAATCAGTAGAA
11831 AAGAGTAAAAGTAA
66 AAGAGTAAAAGTAA
11845 AAGAAGTAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
90 16 0.23
91 2 0.03
93 2 0.03
94 51 0.72
ACGTcount: A:0.56, C:0.03, G:0.26, T:0.15
Consensus pattern (90 bp):
AGTAAAAGTAAAAGAAATAATCAGTAGAAGAAAAAGAGGAAAAGAAGAAGAAGTAATCAGTAGAA
AAGAGTAAAAGTAAGAGGAGTGATC
Found at i:11806 original size:36 final size:32
Alignment explanation
Indices: 11766--11901 Score: 139
Period size: 36 Copynumber: 4.4 Consensus size: 32
11756 AGGAGTGATC
11766 AGTAAAAGTAAAAGAAGTAATCAGTAGAAGTGAAAG
1 AGTAAAAGTAAAAGAAGTAATCAGTAG-A---AAAG
11802 AGTAAAAG-AAGAAGAAGTAATCAGTAGAAAAG
1 AGTAAAAGTAA-AAGAAGTAATCAGTAGAAAAG
11834 AGTAAAAGTAAAAGAAGTAAT---T---AAA-
1 AGTAAAAGTAAAAGAAGTAATCAGTAGAAAAG
* *
11859 AGTAAAAGTAAGAGAAGTAATCAGT--CAAAG
1 AGTAAAAGTAAAAGAAGTAATCAGTAGAAAAG
11889 AGTAAAAGTAAAA
1 AGTAAAAGTAAAA
11902 AGGAGTCACC
Statistics
Matches: 91, Mismatches: 2, Indels: 20
0.81 0.02 0.18
Matches are distributed among these distances:
25 20 0.22
26 3 0.03
28 1 0.01
29 4 0.04
30 12 0.13
32 22 0.24
33 2 0.02
35 3 0.03
36 24 0.26
ACGTcount: A:0.59, C:0.03, G:0.22, T:0.16
Consensus pattern (32 bp):
AGTAAAAGTAAAAGAAGTAATCAGTAGAAAAG
Found at i:12372 original size:6 final size:6
Alignment explanation
Indices: 12361--12399 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
12351 AAAGCAAAGC
12361 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA
1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA
12400 GCAGAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATCT
Found at i:15117 original size:6 final size:6
Alignment explanation
Indices: 15106--15144 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
15096 AAAGCAAAGC
15106 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA
1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA
15145 GCAGAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATCT
Found at i:16102 original size:10 final size:10
Alignment explanation
Indices: 16087--16112 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16077 AAGGACTCTA
16087 GAATTTTCTG
1 GAATTTTCTG
16097 GAATTTTCTG
1 GAATTTTCTG
16107 GAATTT
1 GAATTT
16113 GGCAGCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (10 bp):
GAATTTTCTG
Found at i:16737 original size:20 final size:19
Alignment explanation
Indices: 16687--16726 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 19
16677 AAATAGGGTA
16687 AAAACAGATATAAAAATAGC
1 AAAA-AGATATAAAAATAGC
16707 AAAAAGTATATAAAAATAGC
1 AAAAAG-ATATAAAAATAGC
16727 TATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.65, C:0.07, G:0.10, T:0.17
Consensus pattern (19 bp):
AAAAAGATATAAAAATAGC
Found at i:17204 original size:27 final size:27
Alignment explanation
Indices: 17166--17227 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
17156 TATACTCATC
*
17166 AGAAATCATGTTGTATAATCAATAGAT
1 AGAAATCATGTTGTACAATCAATAGAT
17193 AGAAATCATGTTGTACAATCAATAGAT
1 AGAAATCATGTTGTACAATCAATAGAT
17220 AGAAATCA
1 AGAAATCA
17228 ATCTAATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.29
Consensus pattern (27 bp):
AGAAATCATGTTGTACAATCAATAGAT
Found at i:17217 original size:23 final size:23
Alignment explanation
Indices: 17146--17218 Score: 76
Period size: 23 Copynumber: 3.0 Consensus size: 23
17136 TTACCACTTG
*
17146 AATCATGTTGTATACTC-ATCAGA
1 AATCATGTTGTATAATCAAT-AGA
17169 AATCATGTTGTATAATCAATAGATAGA
1 AATCATGTTGTATAATC---A-ATAGA
*
17196 AATCATGTTGTACAATCAATAGA
1 AATCATGTTGTATAATCAATAGA
17219 TAGAAATCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
23 21 0.49
24 1 0.02
27 19 0.44
28 2 0.05
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (23 bp):
AATCATGTTGTATAATCAATAGA
Found at i:17249 original size:10 final size:10
Alignment explanation
Indices: 17234--17275 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
17224 ATCAATCTAA
17234 TCAACTATAC
1 TCAACTATAC
*
17244 TCAACTATAA
1 TCAACTATAC
17254 TCAATCTA-A-
1 TCAA-CTATAC
17263 TCAACTATAC
1 TCAACTATAC
17273 TCA
1 TCA
17276 TCAGAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
8 3 0.11
9 5 0.18
10 17 0.61
11 3 0.11
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (10 bp):
TCAACTATAC
Found at i:17266 original size:19 final size:20
Alignment explanation
Indices: 17231--17271 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
17221 GAAATCAATC
17231 TAATCAACTATACTCAACTA
1 TAATCAACTATACTCAACTA
17251 TAATCAATCTA-A-TCAACTA
1 TAATCAA-CTATACTCAACTA
17270 TA
1 TA
17272 CTCATCAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 8 0.40
21 3 0.15
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (20 bp):
TAATCAACTATACTCAACTA
Found at i:17284 original size:29 final size:30
Alignment explanation
Indices: 17219--17285 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
17209 AATCAATAGA
17219 TAGAAATCAATCTAATCAACTATACTCAAC
1 TAGAAATCAATCTAATCAACTATACTCAAC
* *
17249 TA-TAATCAATCTAATCAACTATACTCATC
1 TAGAAATCAATCTAATCAACTATACTCAAC
17278 -AGAAATCA
1 TAGAAATCA
17286 TGTTGTATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 30 0.91
30 2 0.06
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.28
Consensus pattern (30 bp):
TAGAAATCAATCTAATCAACTATACTCAAC
Found at i:20010 original size:23 final size:23
Alignment explanation
Indices: 19980--20027 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
19970 CAAAATCATT
19980 AATAAACGTATTTAACCAAGAAC
1 AATAAACGTATTTAACCAAGAAC
20003 AATAAACGTATTTAACCAAGAAC
1 AATAAACGTATTTAACCAAGAAC
20026 AA
1 AA
20028 ATATCAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.17, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAACGTATTTAACCAAGAAC
Found at i:20592 original size:56 final size:57
Alignment explanation
Indices: 20525--20635 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 57
20515 TCGGACTTGG
* * *
20525 GCCCAAAACTGGTACTTAACAGAAACTTCGGGGGCATTTT-GGCATTGAAGATGGTA
1 GCCCAAAACTGGTACTGAACAGAAACTTCGGGAGCATTTTCGACATTGAAGATGGTA
* *
20581 GCCCAAAACTGGTACTGAACAGAAACTTCTGGAGCATTTTCGATATTGAAGATGG
1 GCCCAAAACTGGTACTGAACAGAAACTTCGGGAGCATTTTCGACATTGAAGATGG
20636 CAGAACTGGG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
56 37 0.76
57 12 0.24
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (57 bp):
GCCCAAAACTGGTACTGAACAGAAACTTCGGGAGCATTTTCGACATTGAAGATGGTA
Done.