Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014314.1 Corchorus capsularis cultivar CVL-1 contig14335, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3182
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:153 original size:35 final size:36

Alignment explanation


    Indices: 106--174  Score: 122
    Period size: 35  Copynumber: 1.9  Consensus size: 36

         96 TTTAAATCGC

                                                
        106 AAAAATCTTTTTTTTTTTAGAAAAAACGGAAAAAGG
          1 AAAAATCTTTTTTTTTTTAGAAAAAACGGAAAAAGG

                                    *         
        142 AAAAA-CTTTTTTTTTTTAGAAAAGACGGAAAAA
          1 AAAAATCTTTTTTTTTTTAGAAAAAACGGAAAAA

        175 AAACAAAAAC


Statistics
Matches: 32,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  35   27  0.84
  36    5  0.16

ACGTcount: A:0.48, C:0.06, G:0.13, T:0.33


Consensus pattern (36 bp):   
AAAAATCTTTTTTTTTTTAGAAAAAACGGAAAAAGG
Done.