Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014318.1 Corchorus capsularis cultivar CVL-1 contig14339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54935

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
661--731
4
17.8
4
88
0
88
49
8
0
42
1.33
661--731
6
11.8
6
84
0
88
49
8
0
42
1.33
661--728
14
4.7
14
85
7
82
50
8
0
41
1.34
666--722
22
2.6
22
91
0
96
50
10
0
38
1.37
4289--4324
18
2.0
18
88
0
54
36
11
38
13
1.81
11489--11527
20
1.9
21
89
5
62
28
7
15
48
1.72
11496--11555
29
2.1
29
96
0
111
31
3
21
43
1.69
11659--11768
54
2.0
54
98
0
211
37
10
10
41
1.74
11970--12014
18
2.5
19
85
7
58
6
37
17
37
1.76
18267--18298
11
2.8
12
90
9
50
37
15
0
46
1.46
18267--18298
6
5.7
6
85
14
50
37
15
0
46
1.46
18405--18569
87
1.9
87
98
0
321
34
16
2
46
1.61
20903--20935
13
2.5
13
95
0
57
51
0
0
48
1.00
20903--20941
13
2.7
15
84
15
55
48
2
0
48
1.15
30388--30417
3
10.0
3
92
0
51
70
0
0
30
0.88
35360--35421
32
2.0
32
87
3
90
40
8
8
43
1.64
37184--37264
31
2.6
31
84
9
94
18
24
27
29
1.98
39278--40178
437
2.1
437
82
5
1106
41
14
14
29
1.85
40378--40407
2
15.0
2
100
0
60
50
0
0
50
1.00
41890--41922
17
1.9
17
100
0
66
30
36
6
27
1.81
46197--46301
44
2.4
43
84
10
135
37
10
13
39
1.79
46206--46301
22
4.4
22
78
12
99
35
10
13
40
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46197--46314
44
2.7
44
77
13
127
34
10
16
38
1.82
46244--46318
22
3.5
21
78
10
73
33
10
16
40
1.82
49072--49130
27
2.2
26
84
3
73
30
1
8
59
1.37
49549--49582
15
2.3
15
90
10
52
26
5
5
61
1.42
50197--50224
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!