Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014319.1 Corchorus capsularis cultivar CVL-1 contig14340, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37601

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1159--1193
18
1.9
18
100
0
70
54
5
11
28
1.59
2738--3177
222
2.0
218
88
2
648
35
12
14
37
1.84
12970--13002
17
1.9
17
100
0
66
54
6
6
33
1.50
13404--13446
21
2.0
21
82
17
52
44
9
11
34
1.73
16631--16701
35
2.0
35
97
0
133
33
4
15
46
1.65
18957--19022
31
2.1
31
86
5
89
46
4
16
31
1.67
19077--19130
14
4.0
14
84
15
78
61
0
0
38
0.96
19076--19132
5
10.8
5
76
23
55
59
0
0
40
0.97
19077--19130
3
18.0
3
78
21
60
61
0
0
38
0.96
19069--19130
19
3.0
21
77
22
69
59
0
1
38
1.07
19140--19178
5
8.2
5
88
11
64
56
0
20
23
1.42
19136--19174
18
2.2
18
100
0
78
56
0
20
23
1.42
19145--19169
13
1.9
13
100
0
50
56
0
20
24
1.43
31361--31398
6
6.5
6
96
3
69
34
15
0
50
1.45
32982--33014
14
2.4
14
100
0
66
30
18
0
51
1.46
33929--33959
13
2.4
13
100
0
62
38
9
16
35
1.81
34637--34664
2
14.0
2
100
0
56
50
0
0
50
1.00
36375--36452
38
2.1
38
92
4
131
50
1
19
29
1.56

Tables:   1

The End!