Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014321.1 Corchorus capsularis cultivar CVL-1 contig14342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33780

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
989--1155
33
5.1
32
81
4
172
15
31
32
19
1.93
1176--1208
16
2.0
16
94
5
57
69
0
0
30
0.88
5266--5388
48
2.6
46
82
10
126
34
25
0
40
1.56
5310--5388
23
3.3
23
92
3
122
34
20
0
45
1.51
5397--5464
26
2.6
26
90
0
109
54
10
0
35
1.35
5403--5464
11
4.7
14
70
25
55
56
9
0
33
1.32
5525--5551
4
6.8
4
100
0
54
0
22
0
77
0.76
5550--5583
12
2.8
12
90
0
50
26
0
0
73
0.83
5549--5582
13
2.5
13
90
4
50
23
0
0
76
0.79
5726--5766
21
1.9
22
85
5
57
34
12
39
14
1.84
8575--8665
35
2.6
35
92
0
155
36
13
12
38
1.81
15662--15691
15
2.0
15
100
0
60
40
6
20
33
1.78
15875--15906
2
16.5
2
93
6
57
50
0
0
50
1.00
20406--20466
32
1.9
32
96
0
113
31
22
21
24
1.98
24992--25052
23
2.9
21
83
11
63
44
21
16
18
1.87
24988--25078
25
3.9
24
75
20
79
42
24
16
16
1.88
26353--26387
6
5.8
6
100
0
70
34
0
0
65
0.93
26377--26635
100
2.5
103
91
4
411
39
8
9
42
1.68
28938--28968
2
15.5
2
100
0
62
51
0
0
48
1.00
30501--30528
14
2.0
14
100
0
56
35
28
14
21
1.92

Tables:   1

The End!