Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014328.1 Corchorus capsularis cultivar CVL-1 contig14349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17456

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170--221
25
2.1
24
85
3
68
40
21
0
38
1.53
244--278
18
1.9
18
94
0
61
57
11
2
28
1.48
592--622
10
3.1
10
90
0
53
77
0
0
22
0.77
999--1548
22
25.7
21
68
16
161
33
15
10
40
1.81
1237--1339
23
4.6
23
85
6
113
37
11
9
40
1.75
1497--1548
20
2.6
20
93
0
86
28
17
9
44
1.80
4057--4121
30
2.1
31
91
2
105
49
4
18
27
1.67
4677--4715
20
2.0
20
90
5
62
28
2
15
53
1.55
4683--4720
20
2.0
20
89
5
60
34
0
13
52
1.40
4772--4806
2
17.5
2
100
0
70
51
0
0
48
1.00
5909--5936
12
2.3
12
100
0
56
35
0
7
57
1.26
6588--6623
3
12.0
3
100
0
72
66
0
0
33
0.92
8020--8046
13
2.1
13
100
0
54
33
22
22
22
1.97
8631--8657
2
13.5
2
100
0
54
51
0
0
48
1.00
10192--10259
30
2.3
30
84
0
91
20
19
25
35
1.96
12860--12895
18
2.0
18
94
0
63
27
19
33
19
1.96
13197--13327
68
1.9
68
85
3
183
24
22
19
33
1.97
13292--13520
110
2.1
109
88
4
338
21
21
22
34
1.97
13549--13830
37
7.3
38
82
5
361
38
18
18
24
1.93
13548--13830
76
3.7
77
83
4
365
38
18
18
24
1.92
13547--13817
115
2.3
115
94
2
481
38
18
18
24
1.93
14586--14634
17
2.7
17
87
9
62
20
32
20
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14653--14737
37
2.3
37
85
4
109
17
25
21
35
1.95
14653--14748
37
2.6
37
83
3
104
17
26
21
34
1.96
14779--14896
45
2.8
40
78
15
130
27
23
20
27
1.99
14810--14915
45
2.4
46
85
7
157
26
24
20
28
1.99
15459--15597
46
3.0
46
88
0
188
30
20
16
31
1.95
17029--17074
18
2.6
18
89
3
67
30
10
32
26
1.90
17389--17456
2
34.5
2
97
2
129
50
0
50
0
1.00

Tables:   1

The End!