Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001433.1 Corchorus capsularis cultivar CVL-1 contig01433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3329
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34


Found at i:2055 original size:13 final size:13

Alignment explanation


    Indices: 2037--2061  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2027 GTTAAGTAAT

                         
       2037 AGTTAGTTATATG
          1 AGTTAGTTATATG

                        
       2050 AGTTAGTTATAT
          1 AGTTAGTTATAT

       2062 TAGACTTGTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48


Consensus pattern (13 bp):   
AGTTAGTTATATG
Done.