Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014335.1 Corchorus capsularis cultivar CVL-1 contig14356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95591

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
316--368
20
2.6
20
96
3
97
9
32
32
26
1.88
1481--1531
26
2.0
26
88
0
75
54
5
5
33
1.48
2424--2463
20
2.0
20
100
0
80
25
15
15
45
1.84
7068--7144
29
2.7
29
87
2
111
18
36
11
33
1.87
9278--9324
23
2.0
23
100
0
94
27
12
8
51
1.69
11852--11922
36
2.0
36
94
0
124
16
2
28
52
1.58
14787--14834
17
2.8
17
80
0
51
27
10
20
41
1.85
21999--22793
396
2.0
396
98
0
1527
22
25
26
26
2.00
28031--28061
5
6.4
5
92
7
55
19
0
0
80
0.71
28031--28067
15
2.5
14
87
12
56
18
0
0
81
0.70
28140--28173
8
4.1
8
85
7
50
23
2
14
58
1.50
39043--39077
17
2.1
17
88
0
52
51
2
28
17
1.59
39135--39165
12
2.6
12
94
0
53
61
9
19
9
1.54
40931--41028
8
12.6
8
67
18
64
56
2
15
26
1.50
41033--41096
27
2.4
26
78
14
69
64
4
10
20
1.43
48710--48754
21
2.1
21
83
0
54
17
31
11
40
1.85
48986--49119
65
2.1
65
80
8
148
13
35
38
12
1.83
48997--49116
33
3.7
33
84
5
129
14
35
39
11
1.82
49194--49274
33
2.5
33
82
8
103
13
43
30
12
1.81
49339--49485
63
2.3
64
88
3
208
12
27
43
16
1.84
49339--49485
32
4.6
32
89
4
208
12
27
43
16
1.84
50439--50484
12
3.5
13
88
11
67
28
2
0
69
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50440--50480
3
12.7
3
89
5
55
29
2
0
68
1.03
52738--52805
29
2.3
31
80
14
81
48
17
5
27
1.70
55150--55188
19
2.1
19
90
0
60
53
30
5
10
1.56
60522--60587
30
2.2
30
91
0
105
22
43
24
9
1.82
73123--73166
22
2.0
22
86
0
61
27
22
25
25
2.00
73068--73171
52
2.0
52
96
0
190
23
26
24
25
2.00
73467--73507
22
2.0
20
85
9
55
17
17
4
60
1.52
76336--76361
13
2.0
13
100
0
52
23
0
15
61
1.33
77504--77548
20
2.2
20
84
4
54
66
8
8
15
1.43
79988--80031
22
2.0
21
86
4
61
22
9
2
65
1.32
80643--80673
15
2.1
15
100
0
62
16
32
32
19
1.94
85367--85405
19
2.1
19
90
0
60
12
5
30
51
1.62
86330--86750
70
6.2
68
85
7
522
28
17
28
25
1.98
86317--86750
139
3.2
138
87
5
588
29
17
28
25
1.97
88917--89059
44
3.2
44
89
3
214
37
19
6
37
1.77
90349--90410
21
2.9
21
85
2
88
20
45
16
17
1.86

Tables:   1

The End!