Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014340.1 Corchorus capsularis cultivar CVL-1 contig14361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8388
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:985 original size:33 final size:33

Alignment explanation


    Indices: 937--1027  Score: 112
    Period size: 33  Copynumber: 2.7  Consensus size: 33

        927 CCGCGCAACA

                                              *
        937 CCGGCCACAAGACCGGCCACGCGACATGGACATGT
          1 CCGGCCAC-A-ACCGGCCACGCGACATGGACATGG

             *                *               
        972 CTGGCCATC-ACCGGCCATGCGACATGGACATGG
          1 CCGGCCA-CAACCGGCCACGCGACATGGACATGG

                 *                 
       1005 CCGGCTACAACCGGCCACGCGAC
          1 CCGGCCACAACCGGCCACGCGAC

       1028 CCTTTGTCTA


Statistics
Matches: 48,  Mismatches: 6, Indels: 6
        0.80            0.10        0.10

Matches are distributed among these distances:
  32    1  0.02
  33   40  0.83
  35    6  0.12
  36    1  0.02

ACGTcount: A:0.23, C:0.38, G:0.29, T:0.10


Consensus pattern (33 bp):   
CCGGCCACAACCGGCCACGCGACATGGACATGG
Done.