Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014342.1 Corchorus capsularis cultivar CVL-1 contig14363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56834

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1529--1652
33
3.7
33
81
8
144
8
27
41
22
1.82
5548--5581
5
6.6
5
86
6
50
14
2
0
82
0.79
5655--5688
8
4.1
8
85
7
50
23
2
14
58
1.50
6594--6717
33
3.7
33
81
8
144
8
27
41
22
1.82
13894--13931
20
1.9
20
94
0
67
42
13
10
34
1.78
14115--14142
14
2.0
14
100
0
56
50
14
14
21
1.78
14750--14908
47
3.4
48
79
4
153
30
22
22
24
1.99
15007--15178
69
2.5
69
95
0
299
27
21
23
27
1.99
16051--16157
50
2.1
50
84
3
135
34
14
17
33
1.90
16789--16834
20
2.3
20
85
3
67
17
26
0
56
1.41
20722--20769
21
2.3
22
76
20
57
33
12
12
41
1.80
20860--20905
20
2.1
23
84
11
62
8
8
8
73
1.24
20855--20905
21
2.3
21
83
16
59
9
7
7
74
1.22
20869--20911
23
2.0
21
81
9
50
9
11
9
69
1.36
23400--23438
19
2.1
19
100
0
78
30
25
5
38
1.78
23453--23976
262
2.0
261
97
0
994
23
19
21
35
1.96
24441--24468
14
2.0
14
100
0
56
50
14
14
21
1.78
25065--25127
2
31.5
2
84
6
74
44
1
3
50
1.27
28432--28489
30
1.9
30
89
6
91
22
31
17
29
1.96
31065--31101
19
2.0
18
89
5
56
13
5
13
67
1.39
38761--38807
23
2.0
23
95
0
85
23
36
27
12
1.91
39892--39995
33
3.2
33
81
2
102
42
23
8
25
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39926--40031
33
3.2
33
80
0
113
43
22
9
24
1.83
46077--46119
15
2.9
15
89
0
68
6
25
23
44
1.78
46781--47062
142
2.0
142
97
0
537
32
23
15
27
1.96
47220--47282
22
2.7
23
87
4
92
52
6
4
36
1.48
48713--48771
30
2.0
30
93
6
102
20
30
18
30
1.96
52263--52311
21
2.3
21
85
0
62
10
32
28
28
1.90
53770--53819
24
2.0
26
88
7
77
64
6
0
30
1.18
53815--53875
24
2.4
25
81
13
72
52
11
9
26
1.68
56033--56065
17
1.9
17
88
11
50
0
33
6
60
1.21

Tables:   1

The End!