genome.fa.s14344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014344.1 Corchorus capsularis cultivar CVL-1 contig14365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42251

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1292--1354	25	2.7	24	75	18	69	39	1	7	50	1.41
5748--5787	20	2.0	20	85	5	53	70	7	5	17	1.30
7139--7178	19	2.2	18	86	4	53	30	20	5	45	1.72
8762--8803	21	2.0	21	86	9	59	42	23	9	23	1.83
12554--12660	33	3.2	33	85	2	135	23	38	28	9	1.86
17995--18079	33	2.6	33	82	0	116	23	36	30	9	1.87
17995--18101	33	3.2	33	81	5	101	23	37	28	10	1.88
18992--19570	49	12.1	48	82	5	683	34	15	27	22	1.94
19004--19569	95	5.9	95	84	1	722	33	16	27	22	1.95
19024--19573	189	2.9	188	90	1	814	34	15	27	22	1.94
19583--19809	41	5.5	41	78	11	221	38	19	27	13	1.90
20494--20557	31	2.1	31	82	5	76	42	12	3	42	1.58
20492--20641	51	3.0	50	81	8	160	40	14	2	42	1.60
25337--25364	10	2.8	10	100	0	56	7	42	0	50	1.30
27417--27491	27	2.8	27	81	4	89	46	22	14	16	1.83
30283--30328	24	1.9	24	86	0	65	39	8	19	32	1.82
30215--30392	93	1.9	93	85	0	248	29	13	26	29	1.94
30303--30689	69	5.7	68	93	3	629	28	15	27	28	1.96
30303--30689	137	2.8	137	92	3	640	28	15	27	28	1.96
31505--31602	50	2.0	50	93	0	169	32	13	20	33	1.91
31870--31909	17	2.3	18	95	4	73	2	12	0	85	0.71
31875--31917	17	2.7	15	82	17	52	4	11	0	83	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32494--32547	11	4.8	12	76	19	53	1	16	0	81	0.78
32494--32542	12	4.1	13	77	15	52	0	16	0	83	0.64
32494--32542	23	2.1	23	88	7	73	0	16	0	83	0.64
33079--33145	33	2.0	33	94	0	116	41	20	5	31	1.77
33125--33188	30	2.1	31	94	2	112	35	21	7	34	1.83
33207--33253	15	3.2	15	81	3	60	0	19	0	80	0.70
33200--33262	29	2.2	28	78	13	65	3	20	0	76	0.93
37567--37728	35	4.6	35	95	0	288	38	11	17	32	1.85
38050--38097	14	3.1	16	77	14	55	72	16	10	0	1.10
38047--38093	25	2.0	25	88	12	73	74	17	8	0	1.05
38113--38327	35	6.1	35	88	2	306	38	10	19	32	1.85
39238--39282	24	1.9	23	86	13	65	17	15	11	55	1.68

Tables:   1

The End!